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```
Parameters: -genome Zlat.fasta -intact Zlat.fasta.pass.list -all Zlat.fasta.out
-t 60 -q -blast /public/home/cszx_huangxh/biosoftwares/Anaconda3_8/envs/gene_ann
o/bin/
2024年 08月 26日 星期一 21:25…
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Hi,
I used LTR_retriever for identifying LTR and calculate LAI of ferns, which were confirmed have high rate of LTRs. I installed both LTR_retriever v3.0.1 and v2.9.4. And here is my commond:
`gt…
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Hello,
I am running LTR retriever, and I am coming across these errors:
`/data/00/user/user101/software/LTR_retriever/LTR_retriever/bin/get_range.pl 1 LTRretriever.genome.fna.retriever.scn LTRretrie…
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Hi,
I have reported this bug at www.repeatmasker.org, but was hoping to get some input from here as well. Sorry if this is therefore a duplicate.
My issue:
LTRHarvest was running on a single co…
CIWa updated
9 months ago
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Hello again!
I was pudating my genome erv annotation due to the version update of the genome. BUT this time I found get_full_seqs didn't generate all the sequences LTR_retriever showed in the pass.…
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Hello! When i used LTR_retriever, the output files:fa.mod.nmtf.pass.list and fa.mod.defalse are empty.
The code is :LTR_retriever -genome ./Gallus_gallus.fa -inharvest /public/home/wml/Repeat/02.in…
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**What do you want to know?**
I was running `RepetModeler` with `-LTRStruct`. and it failed at the LTR Structural Analysis part. When I tried to resume the program by using `-recoverDir`, it says t…
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Hi shujun,
I have met the following error when I ran LTR_retriver. The species has two version of the genome, I used one of them. I do not know how to resolve it.
cp: cannot stat ‘./sample.ssrmask…
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Dear Shujun,
We're using LTR_retriever to assess a wheat genome assembly on Magnus. Because the wheat genome is very large and we have a time limit, which is 24 hrs, so we can't finish the analysis…
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When I run the LTR_retriever : `/software/LTR_retriever-2.9.5/LTR_retriever -genome N02.fa -inharvest N02.fa.rawLTR.scn -threads 10 -u 7.3e-9`, I receive some warning information:
1. awk: cannot o…