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A question I posed on [Slack](https://obo-communitygroup.slack.com/archives/C04FC8R3Y1K/p1727336334220449): Is there an OBI class that's appropriate for clinical trials? I've found [investigation (OBI…
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I enlarged the section `### Turtle Serialization Tools` to list some more tools.
In particular, I think this is a promising one, so we need to check it out.
#### EDMC Tools
Elisa Kendall (one of…
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This is the current implementation of writing metadata in JSON format for ingest into HuBMAP infrastructure:
```python
def extract_metadata_write_json(mdata: mudata.MuData, output_json: Path):
…
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I think the home page https://data-interop.era.europa.eu should to be improved.
- It has a brief paragraph about **RINF - Register of Infrastructure** but no links in the page body
- it doesn't desc…
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##### Project link
https://github.com/orgs/geneontology/projects/159
##### Project description
As part of the discussion from the UNC GO meeting, we decided to go ahead with a joint GO/GOA pipeline…
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[close if we think this is not Uberon's responsibility]
It's good that Allen are producing the OWL themselves. I wish that they provided a central source of truth with table of downloads
…
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Using the tutorial on https://bioc.ism.ac.jp/packages/3.7/bioc/vignettes/enrichplot/inst/doc/enrichplot.html , I am able to generate object ego and generate a figure from goplot
I then convert my g…
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Get https://www.entsoe.eu/Documents/CIM_documents/Grid_Model_CIM/IEC61970-600-2_CGMES_3_0_1_ApplicationProfiles.zip
Take this ontology `v3.0/RDFSEd2Beta/IEC61970-600-2_CGMES_3_0_0_RDFS_501Ed2CD_EQ.r…
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**Describe the bug**
When running the command, it gets towards the bottom of the process but then errors saying the it could not open the index file. This is a resulting GFF file from MAKER output.
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The effectiveness of term templates for automated classification and alignment depends on a broader semantic infrastructure of ontologies they reference including ontologies of relations, phenotypic q…