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With @hechth @bgruening
The EDAM ontology tools view is a great concept but would be much more useful if the following were addressed:
1. Text-searchable ontologies. Currently I have to scroll th…
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**Submitting author:** @Alexhb02 (Alexander Harding Bradley)
**Repository:** https://github.com/cwru-sdle/FAIRmaterials
**Branch with paper.md** (empty if default branch): main
**Version:** 0.4.2.2
**…
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I like to write my turtle data compactly, using `@base` and @prefix`, like this:
```turtle
@base .
@prefix : .
@prefix owl: .
@prefix skos: .
: a owl:Ontology ;
skos:prefLabel
…
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This is the current implementation of writing metadata in JSON format for ingest into HuBMAP infrastructure:
```python
def extract_metadata_write_json(mdata: mudata.MuData, output_json: Path):
…
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I enlarged the section `### Turtle Serialization Tools` to list some more tools.
In particular, I think this is a promising one, so we need to check it out.
#### EDMC Tools
Elisa Kendall (one of…
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Many of the issues labeled [ontology](https://github.com/Sveino/Inst4CIM-KG/issues?q=is%3Aissue+is%3Aopen+label%3Aontology) here rely on SPARQL queries to find problems.
- And those that do the anal…
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We would like for the COPPER ontology to be added to the BSSO Foundry.
# Project Description
The Contextualised and Personalised Physical activity and Exercise Recommendations (COPPER) ontology…
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### Simulation tool
### Simulation tool
---
id: vcell
version: 7.5.0.27
specificationsUrl: https://github.com/virtualcell/vcell/releases/download/7.6.0.27/biosimulators.json
specificationsPa…
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Hi @BjornFJohansson,
I was thinking that maybe we could start doing the development like in Biopython, where changes are made in PRs to master, which has all branch protections instead of dev_bjorn…
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I have completed an initial evaluation of existing and planned tools for the DMC in #74
I consider this a rough draft to start to work from and it needs greater detail and explanation.
I want to …