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BjornFJohansson
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pydna
Clone with Python! Data structures for double stranded DNA & simulation of homologous recombination, Gibson assembly, cut & paste cloning.
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Expanding the oligo melting temperature calculations
#237
BjornFJohansson
opened
1 week ago
5
Locations overlap
#236
manulera
closed
2 days ago
1
Bump tornado from 6.4 to 6.4.1
#235
dependabot[bot]
opened
3 weeks ago
0
Bump coverage from 7.4.4 to 7.5.3
#234
dependabot[bot]
opened
1 month ago
0
Docs not available anymore (?)
#233
grassoste
opened
1 month ago
2
Bump coverage from 7.4.4 to 7.5.2
#232
dependabot[bot]
closed
1 month ago
1
Bump requests from 2.31.0 to 2.32.0
#231
dependabot[bot]
opened
1 month ago
0
Bump pytest from 8.1.1 to 8.2.1
#230
dependabot[bot]
opened
1 month ago
0
SeqFold
#229
BjornFJohansson
opened
1 month ago
0
SeqViz as a sequence viewer for Dseqrecord objects
#228
BjornFJohansson
opened
1 month ago
0
Issue 196
#227
manulera
closed
2 days ago
3
Bump jinja2 from 3.1.3 to 3.1.4
#226
dependabot[bot]
opened
1 month ago
0
Bump coverage from 7.4.4 to 7.5.1
#225
dependabot[bot]
closed
1 month ago
1
Overlapping restriction enzymes gives a value error.
#224
BjornFJohansson
opened
2 months ago
2
Bump coverage from 7.4.4 to 7.5.0
#223
dependabot[bot]
closed
1 month ago
1
Bump pytest from 8.1.1 to 8.2.0
#222
dependabot[bot]
closed
1 month ago
1
closes #216 (2)
#221
manulera
closed
1 month ago
3
Bump idna from 3.6 to 3.7
#220
dependabot[bot]
opened
2 months ago
0
Bump pillow from 10.2.0 to 10.3.0
#219
dependabot[bot]
opened
3 months ago
1
atomically write default config
#218
jxu10
opened
3 months ago
0
Fix lowercase protospacers not working
#217
dgruano
closed
3 months ago
1
Lowercase `protospacer` does not work
#216
dgruano
closed
1 month ago
2
Improve typing of functions in 'crispr' module
#215
dgruano
opened
3 months ago
1
bump pydivsufsort, <0.0.14 not supported by M1 macs
#214
manulera
closed
3 months ago
1
Bump coverage from 7.4.3 to 7.4.4
#213
dependabot[bot]
closed
2 months ago
2
Bump pytest from 8.0.2 to 8.1.1
#212
dependabot[bot]
closed
2 months ago
1
Bump pytest-doctestplus from 1.1.0 to 1.2.1
#211
dependabot[bot]
opened
3 months ago
1
Bump nbval from 0.10.0 to 0.11.0
#210
dependabot[bot]
opened
3 months ago
1
Bump pyparsing from 3.1.1 to 3.1.2
#209
dependabot[bot]
opened
3 months ago
1
Bump pytest from 8.0.2 to 8.1.0
#208
dependabot[bot]
closed
4 months ago
1
Merge and new release pydna-6.0.0a29
#207
BjornFJohansson
closed
4 months ago
2
Bump prettytable from 3.9.0 to 3.10.0
#206
dependabot[bot]
closed
4 months ago
2
Bump pytest from 8.0.0 to 8.0.2
#205
dependabot[bot]
closed
4 months ago
2
Bump poetry from 1.7.1 to 1.8.0
#204
dependabot[bot]
closed
4 months ago
2
Bump matplotlib from 3.7.4 to 3.7.5
#203
dependabot[bot]
closed
4 months ago
2
Bump pytest from 8.0.0 to 8.0.1
#202
dependabot[bot]
closed
4 months ago
2
Bump seguid from 0.0.3 to 0.0.4
#201
dependabot[bot]
closed
4 months ago
1
Duplicated assembly products if fragments contain overlapping matches
#200
manulera
closed
4 months ago
2
Cutsite pairs rebased
#199
manulera
closed
4 months ago
2
tests/test_module_dseqrecord.py::test_figure fails
#198
manulera
closed
4 months ago
1
Edge case in Anneal.products
#197
manulera
closed
4 months ago
0
Style
#196
BjornFJohansson
opened
5 months ago
9
Inconsisten behaviour of features when calling dseqrecord.shifted depending on strand
#195
manulera
closed
4 months ago
0
Dseqrecord.shifted with argument 0 does not return a copy of the sequence, but the sequence itself
#194
manulera
closed
4 months ago
0
New assembly: option to add feature with assembly scars
#193
manulera
opened
5 months ago
3
Which assembly products are returned depends on the input order
#192
manulera
opened
5 months ago
4
Next getitem implementation for circular sequences
#191
manulera
opened
5 months ago
0
Bump pydivsufsort from 0.0.12 to 0.0.14
#190
dependabot[bot]
closed
5 months ago
2
Bump pytest from 7.4.4 to 8.0.0
#189
dependabot[bot]
closed
5 months ago
1
Bump coverage from 7.4.0 to 7.4.1
#188
dependabot[bot]
closed
5 months ago
1
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