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BjornFJohansson
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pydna
Clone with Python! Data structures for double stranded DNA & simulation of homologous recombination, Gibson assembly, cut & paste cloning.
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Extended IUPAC alphabet for ds and ss DNA (dsIUPAC)
#327
BjornFJohansson
opened
1 week ago
0
closes #262
#326
manulera
closed
2 weeks ago
1
Requests optional dependency
#325
manulera
closed
2 weeks ago
2
closes #279 again (for circular seqs)
#324
manulera
closed
2 weeks ago
2
Bump nbstripout from 0.7.1 to 0.8.0
#323
dependabot[bot]
closed
1 week ago
1
Check behaviour of spaces when creating `Dseq` objects from a text representation
#322
dgruano
opened
3 weeks ago
2
Creating `Dseq` with crick strand but without `watson` nor `ovhg` returns `math domain error`
#321
dgruano
opened
3 weeks ago
1
fix icon link + 2 small bug fixes
#320
manulera
closed
1 week ago
5
Bump setuptools from 69.5.1 to 70.0.0
#319
dependabot[bot]
closed
1 week ago
1
Bump certifi from 2024.2.2 to 2024.7.4
#318
dependabot[bot]
closed
1 week ago
1
Bump requests from 2.31.0 to 2.32.2
#317
dependabot[bot]
closed
1 week ago
1
Bump zipp from 3.18.1 to 3.19.1
#316
dependabot[bot]
closed
1 week ago
1
Bump urllib3 from 2.2.1 to 2.2.2
#315
dependabot[bot]
closed
1 week ago
1
User cloning
#314
dgruano
closed
1 week ago
4
Implement Gateway Cloning
#313
dgruano
opened
1 month ago
6
Cannot pass `max_nodes` to `Assembly`
#312
dgruano
opened
1 month ago
2
Fix action
#311
manulera
closed
1 month ago
1
Fix link in README
#310
dgruano
closed
1 month ago
1
Implement USER cloning
#309
dgruano
opened
1 month ago
5
Bump pyparsing from 3.1.2 to 3.1.4
#308
dependabot[bot]
closed
1 week ago
2
Bump sphinx-rtd-theme from 3.0.0 to 3.0.1
#307
dependabot[bot]
closed
1 week ago
2
Release?
#306
manulera
closed
4 weeks ago
4
Deploy docs on release only
#305
manulera
closed
4 weeks ago
1
New docs
#304
manulera
closed
1 month ago
12
dummy change to test action
#303
manulera
closed
1 month ago
2
Branch structure
#302
manulera
opened
1 month ago
2
Issue 270
#301
manulera
closed
1 month ago
2
Primerdesignbug
#300
manulera
closed
1 month ago
3
Golden Gate: backbones assembling together
#299
manulera
opened
1 month ago
2
tests for #281 #279, add type to pcr
#298
manulera
closed
1 month ago
1
closes #261
#297
manulera
closed
1 month ago
1
Dev bjorn
#296
manulera
closed
1 month ago
0
Updated notebooks
#295
manulera
closed
1 month ago
1
Small fixes for Example_Restriction contribution
#294
manulera
closed
1 month ago
2
Bump pillow from 10.3.0 to 10.4.0
#293
dependabot[bot]
closed
1 month ago
0
Bump autopep8 from 2.1.0 to 2.3.1
#292
dependabot[bot]
closed
1 month ago
0
Bump black from 24.4.2 to 24.8.0
#291
dependabot[bot]
closed
1 month ago
0
Bump sphinx-rtd-theme from 2.0.0 to 3.0.0
#290
dependabot[bot]
closed
1 month ago
0
Bump prettytable from 3.10.0 to 3.11.0
#289
dependabot[bot]
closed
1 month ago
0
Figure to explain the design.assembly_fragments function
#288
BjornFJohansson
closed
1 month ago
1
Add some basic type hints
#287
kawinsw
closed
1 month ago
2
Make reference to Bioconda/pydna
#286
BjornFJohansson
opened
1 month ago
2
updated example_restriction
#285
manulera
closed
1 month ago
0
New CRISPR example notebook (#260)
#284
hiyama341
closed
1 month ago
0
dependabot monthly
#283
BjornFJohansson
closed
1 month ago
2
Run dependabot monthly
#282
BjornFJohansson
closed
1 month ago
0
shift_location: allow shifting ignoring length of the sequence
#281
manulera
closed
1 month ago
1
[CRISPR module] Support IUPAC notation in PAMs
#280
dgruano
opened
1 month ago
3
Error in annotation for PCRs
#279
manulera
closed
2 weeks ago
3
Streamline README (#261)
#278
manulera
closed
1 month ago
1
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