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BjornFJohansson
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pydna
Clone with Python! Data structures for double stranded DNA & simulation of homologous recombination, Gibson assembly, cut & paste cloning.
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Simpler cut representation
#187
manulera
closed
5 months ago
0
Revise handling of double-cutting enzymes
#186
manulera
closed
5 months ago
0
Bump pillow from 10.1.0 to 10.2.0
#185
dependabot[bot]
closed
5 months ago
3
Cutsite pairs bugs
#184
manulera
closed
5 months ago
0
Cutsite pairs bugs
#183
manulera
closed
5 months ago
0
Revise getitem in Dseqrecord
#182
manulera
closed
5 months ago
1
Error when extracting composed features from overhangs
#181
manulera
opened
5 months ago
0
Dseqrecord: error transferring features when cutting a plasmid open
#180
manulera
closed
5 months ago
0
Update shift_location for origin-wrapping feature with strand None
#179
manulera
closed
5 months ago
1
Document what's the reference for the cut representation
#178
manulera
closed
5 months ago
0
Issue 152 2
#177
manulera
closed
5 months ago
0
Type hinting
#176
manulera
opened
5 months ago
0
Bump biopython from 1.81 to 1.83
#175
dependabot[bot]
closed
5 months ago
1
Bump jinja2 from 3.1.2 to 3.1.3
#174
dependabot[bot]
closed
5 months ago
2
Bump pillow from 10.1.0 to 10.2.0
#173
dependabot[bot]
closed
5 months ago
2
Bump pytest from 7.4.3 to 7.4.4
#172
dependabot[bot]
closed
5 months ago
2
Bump coverage from 7.3.2 to 7.4.0
#171
dependabot[bot]
closed
5 months ago
2
Bump coverage from 7.3.2 to 7.3.4
#170
dependabot[bot]
closed
6 months ago
2
Bump biopython from 1.81 to 1.82
#169
dependabot[bot]
closed
5 months ago
1
Bump coverage from 7.3.2 to 7.3.3
#168
dependabot[bot]
closed
6 months ago
2
Bump pytest-doctestplus from 1.0.0 to 1.1.0
#167
dependabot[bot]
closed
5 months ago
2
Unexpected products from assemblies?
#166
manulera
opened
7 months ago
4
Alternative assembly implementation
#165
manulera
opened
7 months ago
3
Bump sphinx-rtd-theme from 1.3.0 to 2.0.0
#164
dependabot[bot]
closed
7 months ago
1
Issue 157
#163
manulera
closed
7 months ago
1
Should numbers greater than len raise errors in __get_item__?
#162
manulera
opened
7 months ago
2
Different behaviour of __getitem__ in Dseqrecord and Dseq
#161
manulera
closed
5 months ago
2
Feature error in Dseqrecord::__getitem__ when slicing circular molecules
#160
manulera
closed
5 months ago
2
Delete stale branches?
#159
manulera
closed
5 months ago
3
Support for ligation of partially overlapping overhangs?
#158
manulera
opened
7 months ago
4
Separating detection of cutsites from cutting
#157
manulera
closed
5 months ago
1
Bump matplotlib from 3.7.3 to 3.7.4
#156
dependabot[bot]
closed
7 months ago
0
closes #154
#155
manulera
closed
7 months ago
1
Running sphinx documentation locally
#154
manulera
closed
7 months ago
1
what is pos in Dseq?
#153
manulera
closed
7 months ago
2
Using poetry dependencies in github actions
#152
manulera
closed
5 months ago
8
Genbank COMMENT to indicate overhangs
#151
manulera
opened
7 months ago
0
Issue 147
#150
manulera
closed
7 months ago
2
Should molecules with overhangs be allowed to be circular?
#149
manulera
opened
7 months ago
2
Bump pydivsufsort from 0.0.11 to 0.0.12
#148
dependabot[bot]
closed
7 months ago
2
Instantiate Dseq from full sequence and left and right overhangs
#147
manulera
closed
7 months ago
2
Bump pytest from 7.4.2 to 7.4.3
#146
dependabot[bot]
closed
7 months ago
1
Bump urllib3 from 2.0.2 to 2.0.7
#145
dependabot[bot]
closed
7 months ago
2
Bump coverage from 7.3.0 to 7.3.2
#144
dependabot[bot]
closed
7 months ago
2
Bump pillow from 9.5.0 to 10.0.1
#143
dependabot[bot]
closed
8 months ago
2
Bump urllib3 from 2.0.2 to 2.0.6
#142
dependabot[bot]
closed
8 months ago
2
Bump prettytable from 3.7.0 to 3.9.0
#141
dependabot[bot]
closed
8 months ago
2
Bump coverage from 7.3.0 to 7.3.1
#140
dependabot[bot]
closed
9 months ago
1
Bump pytest from 7.4.0 to 7.4.2
#139
dependabot[bot]
closed
8 months ago
1
Bump pyfiglet from 0.8.post1 to 1.0.0
#138
dependabot[bot]
closed
7 months ago
1
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