-
Hi,
I'm trying to use dada2 to analyse PacBio 16S full amplicon data. I only have four samples which I filtered with these settings:
```
> track2 print(track2)
re…
-
### Description of feature
Calculate the percentage of PacBio read data filtered before alignment. This was flagged by Kamil.
-
MHC, LPA, etc.
HPRC+AoU1 chr6 KAGE panel and the input panel VCF can be found in this submission: https://app.terra.bio/#workspaces/allofus-drc-wgs-lr-prod/AoU_DRC_WGS_LongReads_PacBio%20PAPER%20CO…
-
Here are details regarding barcodes into PCR products once general primer pair is determined to be viable
https://d.pr/f/K2we5f
sr320 updated
1 month ago
-
Hi,
Thank you for the excellent tool for simulating long reads! I'm using TKSM to simulate PacBio reads and have a couple of questions:
How can I specify the exact number of reads I want to simu…
-
### Description of feature
We could check against tools/settings listed here: https://github.com/PacificBiosciences/pb-metagenomics-tools
(Props to @Midnighter for the tweet leading to the finding…
-
Dear developers,
Thank you for providing such a useful tool!
I think there could be a mistake in `bcftools/mpileup_bench/get_data.sh`
```bash
echo "Getting PacBio $reg"
samtools view -o pac…
-
Hello Mikhail,
We upgraded our OS from CentOS7 to a fresh install of RedHat 9.4 on a new HDD, reinstalled miniconda, then installed flye into a new environment. Our assemblies crash in the consensus …
-
Hi,
I have Pacbio FLNC reads in fastq format. What options should be specified while running the tool. I was thinking
`--data_type pacbio --fl_data`. Is this correct?
Thanks
Abhijit
-
I have an RNA seq that I need to assemble from PacBio and when I send the script the program do not pass the stage 2. I work with PACbio long read Hifi sequence that end up being all around 12 mil…
A-pcd updated
1 month ago