nf-core seqinspector issues

nf-core / seqinspector

QC pipeline to inspect your sequences

https://nf-co.re/seqinspector

MIT License

7 stars 21 forks source link

issues

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Add skip tools parameter for tool selection

#68 Aratz opened 3 days ago
3
Adds fq/lint for early validation of FASTQs

#67 adamrtalbot opened 3 weeks ago
5
Adds FASTQE for summarising FASTQ scores as emojis

#66 adamrtalbot opened 3 weeks ago
1
Sylph

#65 jiahang1234 opened 3 weeks ago
3
Fastqscreen

#64 FranBonath closed 2 weeks ago
1
Update CONTRIBUTION regarding displaying tool results

#63 matrulda closed 3 weeks ago
5
Add SeqWho as alignment-free FastQScreen alternative

#62 MatthiasZepper opened 3 weeks ago
0
Speed up nf-test CI by excluding modules

#61 kedhammar opened 3 weeks ago
0
Add relative sample size input in subsampling

#60 nggvs opened 3 weeks ago
0
Seqkit

#59 sarahjeeeze opened 3 weeks ago
1
Seqkit

#58 sarahjeeeze closed 3 weeks ago
3
add fq lint

#57 erkutilaslan closed 1 week ago
5
added seqfu stats

#56 ctuni closed 2 weeks ago
2
Add a paired-end test

#55 nggvs opened 3 weeks ago
0
Upstream FastQ-screen changes to modules

#54 edmundmiller opened 3 weeks ago
0
Add FastQ-Screen database multiplexing

#53 edmundmiller opened 3 weeks ago
9
add bbmap clumpify

#52 erkutilaslan opened 3 weeks ago
1
Add nf-test to CI

#51 kedhammar closed 3 weeks ago
7
Add subsampling

#50 nggvs closed 3 weeks ago
1
Manual merge nf-core-tools 3.0.2

#49 kedhammar closed 4 weeks ago
2
add module bbmap/clumpify

#48 erkutilaslan closed 4 weeks ago
2
Add kraken2 phylogenetic assignment subworkflow

#47 ctuni opened 4 weeks ago
8
Magmap release

#45 danilodileo opened 4 weeks ago
0
add kraken2 to seqinspector

#44 FranBonath opened 4 weeks ago
1
make a module for sylph

#43 FranBonath opened 4 weeks ago
0
add bbtools to seqinspector

#42 FranBonath opened 4 weeks ago
0
add clumpify to seqinspector

#41 FranBonath opened 4 weeks ago
0
add SeqKit to seqinspector

#40 FranBonath opened 4 weeks ago
0
add SeqFu to Seqinspector

#39 FranBonath opened 4 weeks ago
0
add BBMap to seqinspector

#38 FranBonath opened 4 weeks ago
1
add seqqc to seqinspector

#37 FranBonath opened 4 weeks ago
0
MultiQC output

#36 FranBonath opened 1 month ago
1
adding Run folder functionality

#35 FranBonath closed 3 weeks ago
1
take care of the open PR by Mahesh

#34 FranBonath opened 1 month ago
0
add support for long reads (PacBio and/or ONT)

#33 FranBonath opened 1 month ago
1
enable selection of tools

#32 FranBonath opened 1 month ago
2
Add FQlint module

#31 MatthiasZepper opened 1 month ago
0
New module: Sequali

#30 MatthiasZepper closed 3 weeks ago
3
New subworkflow and module to assess polyG error in NovaSeq X Plus data

#29 MatthiasZepper opened 1 month ago
0
Implement subsampling

#28 MatthiasZepper closed 3 weeks ago
0
add preseq to nf-core/seqinspector

#27 FranBonath opened 1 month ago
1
Important! Template update for nf-core/tools v3.0.2

#26 nf-core-bot closed 4 weeks ago
0
Important! Template update for nf-core/tools v3.0.1

#25 nf-core-bot closed 1 month ago
1
Important! Template update for nf-core/tools v3.0.0

#24 nf-core-bot closed 1 month ago
1
Enable tool selection for seqinspector

#23 MatthiasZepper closed 1 month ago
12
Run nf-test in CI

#22 Aratz closed 3 weeks ago
0
Seqinspector fastqscreen - change to iGenome input

#21 FranBonath opened 2 months ago
0
Implement tagging system

#20 Aratz closed 2 months ago
13
adding fastq_screen module

#19 FranBonath closed 3 weeks ago
11
Added FASTP using the nf-core/fastq_fastqc_umitools_fastp sub-workflow

#18 GallVp closed 4 months ago
2