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Hi,
I've finished the featuring step and got the output feature.pkl for the multiple prediction. Then I got these error messages:
(parafold) [linx@localhost ParallelFold-main]$ I0803 08:18:26.62…
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I have a fundamental doubt about the difference between Alphafold2 and Parafold running procedure, how to determine whether Parafold is doing Parallel task unlike sequential tasks performed by Alphafo…
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Hello.
I pulled the latest Parafold changes and created a new environment with the suggested installation steps. Next I ran the following command to use Alphafold.
```
(parafold)[ParallelFold]$…
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Hi,
Thank you for developing Parafold.
I successfully ran the CPU part using the script you provided, however when I try to run the GPU part I get the error attached to the file here. This is the…
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Here is the paper:
4.2.1 CPU acceleration. To accelerate the CPU stage, three independent sequential MSA searches can be arranged in parallel (Fig 4). Due to the limited CPU cores accompanying GPUs…
wttat updated
2 years ago
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This is an interesting project with great potential for solving ligand-receptor pairing. However, I have encountered several issues that make it difficult for those who are not familiar with your code…
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Hi, First thanks for your work on create_fakemsa and create_manual_template,
I made some modify to make it work on multimer mode.
But I find out that Alphafold keeps doing query on pdb70 database an…
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When I use the code to compute T1050.fasta, which is composed of 700 residuses, the command line output the problem。
The Environment is GPU: A100, Ubuntu,but I use higher version jax and jaxlib, is …
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Last day, I make some experiments in a Server to run the
`./run_alphafold.sh -d /dataset/ -o result -p monomer -m model_2 -i input/T1061.fasta`
and I read the log, confused, the T1061 is 949AA.
`…
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Hello,
I modified alphafold so that it takes my own custom template features. I would like to modify it again so that it runs without MSAs features. Is there any convenient way to do this ?
Does s…