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![image](https://github.com/user-attachments/assets/eb7060c4-328c-4919-a96a-46bac353bfd7)
“Generation steps during inference”
how to get the "genes & predicted expression" ?
i don not find in the …
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Can I use _Prodigal_ to **predict fungal genes**?
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While using Bakta, I realized that one of the known genes was not predicted. However, both Prokka and PGAP accurately predicted the gene. I tried using the -region option for this. Although Prokka's g…
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Hello, this is an excellent piece of work. Based on the code provided in the "MERFISH_scRNAseq_integration.ipynb" notebook, I have combined my MERFISH data with single-cell RNA-seq data and inferred t…
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Hi,
I am encountering an issue:
Initially, when I ran the following code:
```
engep_predict
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I have used identical RNA-seq data and protein sequences as inputs for the BRAKER to predict gene models for eight different varieties of the same species.
However, the number of gene models produce…
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Hi Jon,
I think you mentioned MetaEuk (https://github.com/soedinglab/metaeuk) to me at some point (as a comment in a failed research application). I've experimented a bit with it after that, and rece…
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I used to use scanpy python package for down-stream analysis.
I wonder how the predicted gene expressions can be analyzed in Anndata (Scanpy).
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### Project Title: **Predicting Antibiotic Resistance Mechanisms with DeepChem**
### Project Description
Develop a deep learning model in the DeepChem framework to predict the mechanisms of antibi…
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After following the new installation guide and a number of hours in dependency hell, I got the package installed!!! Next, I converted my feature names in my seurat object to human as adt_predict does …