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While investigating https://github.com/monarch-initiative/monarch-app/issues/819, I noticed a bottleneck in loading the "merged" context in these lines in curie:
https://github.com/biopragmatics/cu…
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https://dev.monarchinitiative.org/MGI:3696575
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There appear to be two different prefixes for Wikidata that are not merged together. From what I understand, the fact that both of these have the synonym type "canonical" means that they are considere…
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**Project description**
LinkML is a flexible modeling language that allows you to author schemas in YAML that describe the structure of your data. Additionally, it is a framework for working with a…
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We still don't have functioning links for Orphanet curies, we need to make sure that it's added to `merged` or `merged.monarch` in prefixmaps. This should be a very quick change!
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https://github.com/linkml/prefixmaps/blob/b8a2bbdf56cca5dec9d12e7cc4a9cf408736abeb/pyproject.toml#L3
is this causing downstream issues?
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This will help to connect 400k & 100k gene expression edges respectively into MonarchKG.
https://obofoundry.org/ontology/fbbt.html
https://obofoundry.org/ontology/wbbt.html
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In the BioPortal context file (https://github.com/linkml/prefixmaps/blob/main/src/prefixmaps/data/bioportal.csv#L199-L202), two prefixes share the same URI prefix. This seems to invalidate the claim o…
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## Overview
I tried `--mapping-predicate-filter omoprel:Mapped_from` and it did not work, but `--mapping-predicate-filter https://w3id.org/cpont/omop/relations/Mapped_from` did.
## Details
### Co…
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In the context of https://github.com/enola-dev/enola/issues/757, I've just run into:
```
/home/vorburger/git/github.com/enola-dev/enola/docs/models/enola.dev/files.linkml.yaml
warning Schema m…