-
hi, from the docs it's currently not clear how to run boltz for two interacting proteins? do you keep the AF2.3MM convention of `:` or does one pass them as two separate chains with individually calcu…
-
Hey, just a thought. You could probably do something similar with the new gLM2 and Sergey's "Categorical Jacobian" method, and this would be very useful for filtering binders designed by RFdiffusion, …
-
Hi,
First of all, thank you for such wonderful tool. I'm working with proteins translated from new ORFs and I predicted that the new protein interact with another protein, say for e.g. protein X. N…
-
We've received a request to update the field related to "Has this gene or genes been implicated in the above disease?" in the Protein Interactions section of the GCI. Example: https://curation-test.cl…
-
Hi Zhaohan,
FusionDTI is a fantastic work. I am currently attempting to test it for drug-protein interaction prediction, but I am uncertain how to obtain the Uniprot IDs for all the protein sequen…
-
The list_init API response depends CSV files "generated/misc/list_init_categories.csv" and "generated/misc/list_init_fields.csv" I have initiated that you will start maintain. Please update those file…
-
Thanks for your wonderfull software. I'm fresh in protein-protein interaction analysis. And I have run all the scripts in the dscript/tests/test_commands.py. However, I still didn't know how to create…
-
From string-db.org, will be used for constructing gene-gene edges of our graph.
Information Needed
- Source of data
- Where data is located
- Description of data
-
Hi,
thank you for sharing your script of doing protein docking.
I am currently working with protein-protein interaction, and am trying to use your codes on my alphafold3 predicted structure.
Ho…
-
[Rhea](https://www.rhea-db.org/) is a database of "chemical and transport reactions of biological interest". Mappings between chemical compounds and Rhea IDs is available through mychem.info (and will…