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Hi Vadim and community. I am playing around with the filtering the main report values. As part of this, I have been trying to reproduce the pg_matrix values I observe. When reproducing your filters as…
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**Addition of Algorithm:**
My name is Matthew Marino. I am a CFDE GlyGEN summer intern working under Jeet Vora and Rene Ranzinger. I am currently trying to create multiomics workflows starting with…
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This issue is to provide a shared space (a bit more structure than slack) for all the members of the community working on tidy adapters/analysis frameworks for proteomics/metabolomics/mass spectroscop…
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The current manuscript has a couple of goals:
- [ ] Provides statistics about computational proteomics software usability through citations, poll and PRIDE data.
- [ ] Discuss major challenges…
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### Problem Description
is it possible to have the full SDMetrics in R. Is there a way one can contribute into this effort for the comunity?
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# Abstract
Cytoscape is an open-source software to visualize and analyze biological networks. Developers can add new features to Cytoscape by developing their own Java-based apps by utilizing the C…
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Update the following URL to point to the GitHub repository of
the package you wish to submit to _Bioconductor_
- Repository: https://github.com/wilhelm-lab/koinar
Confirm the following by editi…
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Hi Douwe Schulte,
Thanks a lot for developing such a great tool which benefits the whole proteomics community!
I am using several de novo peptideing sequencing tools (including casanovo) that di…
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In the following issue #671 we discussed the major changes for SDRF specification during the next release 1.1. One of them, is the extension of SDRF for metabolomics.
> **GOAL**: The aim of adapti…
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## User story
>As a submitting author
>I want to see the guidelines for what to submit as part of my proteomics dataset
>So that I can include all the required data and details
## Acceptan…