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snijderlab
/
stitch
Template-based assembly of proteomics short reads for de novo antibody sequencing and repertoire profiling
MIT License
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Suggested setting for fasta file as input with certain modifications
#250
irleader
opened
1 month ago
8
Casanova help
#249
wenjinwu1985
closed
2 months ago
0
Error in Casanovo file parsing
#248
wenjinwu1985
closed
3 months ago
40
confused result
#247
biocc
closed
5 months ago
2
How to use raw data
#246
biocc
closed
5 months ago
1
How can I use Stitch to assemble my peptide sequences?
#245
huangli1219
closed
6 months ago
1
Casanovo local confidence invalid
#244
Ln9052
opened
7 months ago
3
Index out of range
#243
MengTingHe2023
closed
7 months ago
3
Unrecognized Casanovo result.mztab file line start code
#242
Ln9052
closed
8 months ago
16
error in basic search
#241
pikiton
closed
9 months ago
3
Folder search
#240
MengTingHe2023
closed
8 months ago
4
How could I use stitch to analyze my antibody sequence produced by PEAKS ?
#239
huyoyo2001
closed
8 months ago
13
Support MaxQuant database search input data
#238
douweschulte
opened
11 months ago
5
Use proteases specificity
#237
douweschulte
opened
1 year ago
0
Highlight common errors in consensus alignment
#236
douweschulte
opened
1 year ago
0
Merge reads based on precursor mass
#235
douweschulte
opened
1 year ago
0
Force germline on low DOC
#234
douweschulte
opened
1 year ago
0
Add fastQ export option
#233
douweschulte
closed
5 months ago
1
How to create templates for a new species
#232
biocc
closed
1 year ago
1
Rebuilding CDR3 is still very hard
#231
douweschulte
opened
1 year ago
2
Read align comic / bars view does not work in print
#230
douweschulte
closed
1 year ago
0
Hashes with any used file in batchfile
#229
douweschulte
closed
1 year ago
1
Incorrect linking of Peaks ions tables
#228
douweschulte
opened
1 year ago
0
Linking bug in reads details
#227
douweschulte
closed
1 year ago
0
Score identities in CDRs higher
#226
douweschulte
opened
1 year ago
0
CLI improvements
#225
douweschulte
closed
1 year ago
0
Github actions improvements
#224
douweschulte
opened
1 year ago
0
Small HTML problems
#223
douweschulte
closed
1 year ago
1
Incorrect FileRanges with Alphabets sets
#222
douweschulte
closed
1 year ago
0
Output incorrectly placed
#221
douweschulte
closed
1 year ago
0
Mass alignment handle patches in consensus
#220
douweschulte
closed
1 year ago
0
Separate Peaks/raw data refine procedure
#219
douweschulte
closed
1 year ago
1
Xle disambiguation FDR
#218
douweschulte
closed
1 year ago
0
Use average local confidence of structural read for filtering
#217
douweschulte
closed
1 year ago
1
Switch for Xle disambiguation
#216
douweschulte
closed
1 year ago
0
Handling of long reads
#215
douweschulte
closed
1 year ago
2
Update MS specific terms in the HTML
#214
douweschulte
closed
1 year ago
1
Generalise tree handling
#213
douweschulte
closed
1 year ago
0
Remove header with polyclonal runs
#212
douweschulte
closed
1 year ago
0
Annotate zero confidence positions in structural reads
#211
douweschulte
closed
1 year ago
1
Allow for termini based modifications
#210
douweschulte
opened
1 year ago
0
Implement batchfile extension with other documents
#209
douweschulte
closed
1 year ago
1
Template Refine
#208
douweschulte
opened
1 year ago
0
Support mmCIF files for sequence loading
#207
douweschulte
closed
1 year ago
1
Use Nonselected Templates as Decoy
#206
kostrouc
closed
1 year ago
1
Reformatting Datasets CSV
#205
kostrouc
closed
1 year ago
6
Specifying Non-local Output Dir
#204
kostrouc
closed
1 year ago
2
Building in Windows cmd
#203
kostrouc
closed
1 year ago
2
Getting Started Script for Windows Unsuccessful
#202
kostrouc
closed
1 year ago
2
197
#201
douweschulte
closed
1 year ago
0
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