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snijderlab
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stitch
Template-based assembly of proteomics short reads for de novo antibody sequencing and repertoire profiling
MIT License
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Add CDR column in csv export
#200
douweschulte
closed
1 year ago
0
Select an ambiguous position in the consensus overview
#199
douweschulte
closed
1 year ago
0
Spectrum viewer have a way to show raw values
#198
douweschulte
closed
1 year ago
3
Do something with common massspec errors
#197
douweschulte
closed
1 year ago
6
Refactor readsalignment
#196
douweschulte
closed
1 year ago
1
Implement spectrum loading for other input types
#195
douweschulte
closed
1 year ago
3
Sequence annotation is broken on gap in cdr
#194
douweschulte
opened
1 year ago
2
Research W ion usage
#193
douweschulte
closed
1 year ago
15
List and support different possible input programs
#192
douweschulte
closed
1 year ago
3
Generate reduced set of templates
#191
douweschulte
opened
1 year ago
0
Create a set of templates based on sequence fragments
#190
douweschulte
opened
1 year ago
1
Build optimizer of batchfile
#189
douweschulte
closed
1 year ago
1
Improve handling of multiple joined reads
#188
douweschulte
closed
1 year ago
0
Sequence annotation for graphs broken on cdr joining
#187
douweschulte
closed
1 year ago
1
Additional nice features for spectrum viewer
#186
douweschulte
closed
1 year ago
2
Raw data
#185
douweschulte
closed
1 year ago
0
Add help and export data to the tree
#184
douweschulte
closed
1 year ago
0
Printing has some issues
#183
douweschulte
closed
1 year ago
1
Highlighting templates is broken
#182
douweschulte
closed
1 year ago
0
Create a way to know the format of the exported data
#181
douweschulte
closed
1 year ago
0
Push the example output reports to github pages
#180
douweschulte
closed
6 months ago
1
Colour all template graphs according to annotation
#179
douweschulte
closed
2 years ago
0
Create automated result correctness test
#178
douweschulte
closed
1 year ago
2
CDR2 misplaced in HTML report
#177
douweschulte
closed
2 years ago
0
Sequence motif analysis
#176
douweschulte
closed
1 year ago
2
Second segment joining graph broken
#175
douweschulte
closed
2 years ago
1
Xs in templates does not imply being partial
#174
douweschulte
opened
2 years ago
0
Thoughts on segment joining combined with enforce unique
#173
douweschulte
closed
1 year ago
3
Reads intensities considerations
#172
douweschulte
closed
1 year ago
1
Linux Ubuntu 20.04 LTS: Software does not output Report
#171
fi7855ar
closed
2 years ago
2
Segment names incorrectly matched in recombination order
#170
douweschulte
closed
2 years ago
0
Recombination table more information
#169
douweschulte
closed
2 years ago
0
Progress bar incorrect rendering
#168
douweschulte
closed
2 years ago
0
Reverse lookup of read placement
#167
douweschulte
closed
2 years ago
1
Document the behaviour of enforce unique
#166
douweschulte
closed
2 years ago
0
Deduplicate CDR tables
#165
douweschulte
closed
2 years ago
1
Display sequence annotations in read alignment
#164
douweschulte
closed
2 years ago
4
Warning on duplicate regions in annotated sequences
#163
douweschulte
closed
2 years ago
0
CDR table on detail pages
#162
douweschulte
closed
1 year ago
3
Crash
#161
douweschulte
closed
2 years ago
1
Germline sequence above the predicted sequence in the Alignment pile-up
#160
avilella
closed
1 year ago
2
Allow Sequence logo data to be exported
#159
douweschulte
closed
2 years ago
0
Allow cutoff in Novor data
#158
douweschulte
closed
2 years ago
0
Allow hybrid global/local alignment of reads
#157
douweschulte
closed
1 year ago
3
Input from Novor.Cloud
#156
avilella
closed
2 years ago
15
issue adding Canis_lupus_familiaris IGKC and IGKL
#155
avilella
closed
2 years ago
3
attempting to run with fasta file of peptides
#154
avilella
closed
2 years ago
2
File name as default value for runname
#153
douweschulte
closed
2 years ago
0
Show non perfect matches sets of reads (templates reads tree)
#152
douweschulte
opened
2 years ago
1
Decouple reports from program internal data structures
#151
douweschulte
closed
1 year ago
4
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