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For first try: used XQuery and saved IDs into txt file.
Regex: At least one letter followed by at least 3 numbers.
```
let $doc1 := doc("pmc_result.xml")
let $regex := "[A-Z]+[0-9]{3,}"
for …
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The EUPMC API provides fulltextXML in JATS format, as well as zipped 'supplementary files' which in my experience include full-sized figure images.
The only way to access the files is via the zipped …
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U některých agregátorů OA článků je nutné se nejdříve zaregistrovat a pak teprve se objeví na straně poskytovatele link na plný text. Nešlo by to udělat napřímo, jako to má např. swisscovery přes Unpa…
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I have noticed strange behaviour using the `PubMedFetcher` API.
When you try to use the `article_by_doi` method, often it does not return an article, even when that DOI is available in PubMed. I du…
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Does it support articles from PMC ? I tested it on `article` element from this call
http://www.ncbi.nlm.nih.gov/pmc/oai/oai.cgi?verb=GetRecord&metadataPrefix=pmc&identifier=oai:pubmedcentral.nih.gov:…
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While looking through some REACH output exported in the CMU format, I came across entries that have the fields mixed up. I’ve attached a (non-exhaustive) list of them with this post. They do not comp…
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These rows find true relationships but are not tagged true by the evaluate phase:
```
#pubmed_id pubmed_date_unix_epoch_time pubmed_date_human_readable binary_a_term binary_b_term paragraph_distance …
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getpapers -q extremophiles --outdir ./extremophiles
The returned fulltext_html_urls.txt file contains a list of 836 URLs that initially are 100% DOIs ... however down from about 67th in the list to t…
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This is the overarching issue card for dealing with PDF interaction.
Beagle should:
- [ ] Be able to highlight text in PDF.
- [ ] Be able to grab metadata from paper (reliably). (crossref)
- [ ] Be …
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Hello,
I've been advised by Ex Libris to raise this issue here directly.
The issue is with Harvard 'Cite them right':
It was noted that Primo VE displays the following ‘Cite them Right Harvar…