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Dear Dr Jue Ruan,
I am using wtdbg2 with the new nanopore Q20 reads. I tried setting -x ccs , but got a very fragmented and incomplete assembly.
May you please suggest which parameters should I t…
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Hello! First of all thanks for the tool :)
I have been trying to run:
`Ratatosk correct -v -c 60 -s fq_short.txt -l long_list.txt -o ratatosk1`
in a CPU with up to 3Tb available RAM. It has…
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Hello,
I am attempting to clean up nanopore reads for a haploid fungal nanopore dataset. I am able to run the command without the -c flag which I allowed to run for 18 days between semesters. CPU u…
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Hi,
im running the software to assembly the human genome, i have runned one day, and it is still running,so how can i speed it? generally speaking , what memory perl thread? if i have sufficient me…
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Occasionally Ratatosk imports subtrees (eg a species grafted to a genus) but is unable to graft these to the main tree:
When a curator edits the parent (eg genus) and manually grafts it to the the …
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I'm making a hybrid android app.
I'm using iScroll to handle the scrolling, but there is a weird bug in Android webview.
When the page is first loaded, if I scroll down, the elements of the page sta…
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Hi @GuillaumeHolley,
I am currently working on assembling the genome of a highly heterozygous diploid organism, using a combination of Oxford Nanopore Technologies (ONT - R10) and Illumina sequenc…
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The version 0.9.0 on conda seems to have an issue. After installing Ratatosk using this command 'conda install bioconda::ratatosk', I get an 'Illegal instruction' error when I try to run it. When I tr…
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# This issue tracks daily findings.