vpc-ccg haslr issues - Githubissues

vpc-ccg / haslr

A fast tool for hybrid genome assembly of long and short reads

GNU General Public License v3.0

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issues

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final.fa is 0 kb

#38 bioramg opened 1 year ago
2
Assembling the test data does not generate an assembly

#37 methylome closed 1 year ago
2
Clean raw data prior to assembly

#36 gargkritika opened 1 year ago
0
ERROR: "haslr_assemble" returned non-zero exit status

#35 mictadlo opened 2 years ago
0
Assembling pacbio, nanopore and illumina reads

#34 charles-gumbi opened 2 years ago
2
new release for bioconda

#33 mictadlo opened 2 years ago
0
lr0x.fasta... [ERROR] option -d/--depth is required

#32 mictadlo closed 2 years ago
1
AttributeError: 'module' object has no attribute 'run'

#31 mictadlo opened 2 years ago
1
Much Shorter Assembly than Expected

#30 iek opened 2 years ago
1
kmer determination

#29 mictadlo opened 2 years ago
0
Does this tool do phasing?

#28 ardy20 opened 3 years ago
0
question multiple libraries?

#27 asgiraldoc opened 3 years ago
0
Failing while checking minia

#26 Oieswarya opened 3 years ago
0
Changing K-mer size of Minia leads to final fasta of zero bits

#25 desmodus1984 opened 3 years ago
0
Multiple long read files in the latest version

#24 xie186 opened 3 years ago
0
Short Homo Sapien Assembly from Genome in a Bottle Data

#23 NTNguyen13 opened 3 years ago
10
Bug while running script: "could not find file"

#22 asan-emirsaleh opened 3 years ago
0
Debug Message in log File

#21 heathheckman closed 3 years ago
0
assembling long reads using HASLR... failed ERROR

#20 koujiaodahan opened 3 years ago
9
speed running

#19 koujiaodahan opened 3 years ago
14
Conda version does not produce final assembly

#18 pydupont opened 3 years ago
6
compatibility with HiFi CCS PacBio reads

#17 dabitz opened 4 years ago
0
assembling long reads using HASLR... failed

#16 HanKMU opened 4 years ago
2
Polishing example

#14 pallevillesen opened 4 years ago
1
Why all backbone and asm file are empty?

#13 xiekunwhy opened 4 years ago
6
Using haslr to scaffold a pre-assembled assembly

#12 uncleflybfchen opened 4 years ago
0
Possible to lower memory usage for haslr_assemble

#11 jelber2 opened 4 years ago
1
make clean required before make

#10 jelber2 opened 4 years ago
0
Use preexisting contig assembly instead of minia

#9 mason-linscott opened 4 years ago
2
Small discrepancies in docs

#8 mbhall88 opened 4 years ago
0
Set coverage to use all

#7 mbhall88 closed 4 years ago
3
Using CCS/HiFi PacBio reads

#6 mbhall88 closed 4 years ago
6
Error - std::bad_alloc during "calling consensus sequence between anchors"

#5 jpummil opened 4 years ago
8
Missing result files

#4 bpucker opened 4 years ago
27
Arranging files with paired end short-reads

#3 andreaswallberg closed 4 years ago
2
minimum coverage requirements?

#2 mjmillerlab closed 4 years ago
5
HASLR on heterozygous genomes

#1 dcopetti closed 4 years ago
2