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I don't know if this has been "solved" or not, but I'm thinking it hasn't. As of `0.19.0`, I still get crashing on the peaks plotter. See crash log below just for proof of its existence.
If this ha…
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## Summary
AFQ reconstruction (`pyafq_tractometry`) outputs some errors and doesn't stop there, although it seems stuck in the next step for a long time (still "running" after 30+min | UPDATE: I kill…
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Hello, I am testing the new 0.20.0 update.
I use FreeSurfer input and use the recon workflow with mrtrix single shell ACT.
While 0.19.1 works like a charm, I am now encountering this as soon as …
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Currently, the header information for the `recon_matrix` and `encoding_matrix` extracted from the ismrmrd header of siemens raw data files acquired with Pulseq sequences are not correct.
For my ex…
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Hi,
```
Scheduled 12 tasks of which:
* 1 complete ones were encountered:
- 1 TargetList(target_file=/tmp/tmp64e09z6v, db_location=/root/.local/recon-pipeline/databases/1, results_dir=recon-r…
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Hi, I recently downloaded the docker image to run the Repeatmodeler/Repeatmasker pipeline on my cluster.
I used this command from GitHub to pull the singularity image
```
singularity pull dfam-te…
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**Describe the bug**
While running RepeatModeler, I am consistently getting error at the point where the de novo LTR sequences found by LtrRetriever are being aligned with MAFFT. The RepeatScout / Re…
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Hello! At some point, we worked with @mareikegrotheer and @bloomdt-uw to implement a pipeline for tractography in neonates/infants (see [this repo](https://github.com/bloomdt-uw/babyafq)), oriented sp…
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## Summary
Tried to run 0.22.0 and unstable 0.22.1
Did not get any output from dis_studio_autotrack. From one of the log files (attached)
[slurm-37677449_137.pdf](https://github.com/user-attachment…
aazor updated
1 month ago
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Hi @mattcieslak ,
I was running the `amico_noddi` recon pipeline. The NIFTI files get written but the process appears to have stalled and has been in the same spot for the last 12 hours:
```
22…