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Hi all,
I am really interesting in using your R package to deconvulte some of my bulk RNA-seq data. I was just trying to use the example data which is loaded with the package but I have already encou…
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Hello,
Thank you for amazing tool.
I am new to CNV analysis using RNA-Seq.
Is it possible to use CaSpER for a single bulk RNA-Seq sample such as a tumor sample from a single patient?
Thank you…
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**Question**
We are comparing different aligners and quantifiers to see their impacts on the same RNA-Seq raw data. Of course, it took long time to run one run. My guess is that we do not have to r…
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#### Scientific goals
- Create correlation matrices for polyA samples and ribodeplete (stranded) samples using gene expression data.
- Generate gene outlier thresholds for ribodeplete samples.…
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_From @olgabot on July 6, 2014 22:55_
Hi @jbenet and @maxogden! Thank you so much for the time you took to meet with @mlovci and me this weekend. Here's an overview of our current data management sit…
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![rna_pc1_pc2_control_treated](https://cloud.githubusercontent.com/assets/5261545/25207366/e3f322c6-2522-11e7-9d50-5a27b00b73b0.png)
![rna_pc1_pc3_time](https://cloud.githubusercontent.com/assets/526…
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Hi,
I'm using drop 1.3.3 in order to do aberrant expression analysis. However during outrider execution with 2 bam data and 9 external counts, I'm getting the following error:
```
[Tue May 30 16:…