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Dear Honzee,
This time I am writing to you regarding the info on our variant calling analysis vcf files. We work with total RNA libraries (150x coverage) and we feel our vcf files are quite extensi…
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It looks like a lot of fusions are missed. For example very well known fusions that are always missed by breakfast:
- DUX4-IGH is not found by breakfast in NALM6 cell line (RNA-seq from CCLE).
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This section includes a living Google doc form of the review on helicases as therapeutic targets, which can be viewed and edited through the following link.
https://docs.google.com/document/d/14GnyDP…
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request from @bebatut
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I was taking a look at database matches among the three species and noticed something odd. All three species have miRNAs with database matches to publications of mir-2030, but that was *not* one of th…
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[Breaking Lander-Waterman's Coverage Bound](http://biorxiv.org/content/early/2016/06/23/060384) - assembly
[Sparc: a sparsity-based consensus algorithm for long erroneous sequencing reads.](https://w…
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Here I have described the current strategy regarding the retained diamine cores from the de-novo generated compounds since deprioritising the N-oxide series from which these cores originated.
- P…
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Yi, Nogales says that the Head density is most probably occupied by the Rrp44 NTD. The head density is 20Ang apart from the Body. How does it reconcile with the crystal structure by E. Conti, where Rr…
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'Omics terms can be difficult to learn. Having them described in a single page may help new comers to overcome this barrier quickly and transfer knowhow that may be a pain to transfer through more for…
meren updated
2 years ago