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_https://github.com/sars-cov-2-variants/lineage-proposals/issues/991 Part I
https://github.com/sars-cov-2-variants/lineage-proposals/issues/1675 Part II
https://github.com/sars-cov-2-variants/lineag…
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Hello,
We've been encountering validation errors with the CanCOGeNCovid19 template in versions 5.4.2 and 5.4.1 where the host age is being highlighted if the value is "Missing" and the host gender…
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Especially for future automatic aggregation purposes, it would be nice to be able to access something like genetic distances or imputed mutations on branches of the taxonomy tree.
- Possibly from htt…
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https://grlc.io/api-git/egonw/SARS-CoV-2-Queries/subdir/grlc API is not working https://github.com/egonw/SARS-CoV-2-Queries/tree/master/grlc
Reported by @egonw
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**Is your feature request related to a problem? Please describe.**
We need to run SARS-CoV-2 through SneakerNet
**Describe the solution you'd like**
A new workflow with new plugins
* Amplicon-…
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From https://github.com/sars-cov-2-variants/lineage-proposals/issues/2084
Recently I train a GPT model on viral evolution for SARS-Cov-2 using data up to early-JN.1, and T22119C-S:F186S is its top …
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Liebe Nutzer:innen,
am 23.10.2024. wird es eine Anpassung dieses Datensatzes geben. Hintergrund ist, dass an einigen Kläranlagen seit Oktober 2024 auch Influenzaviren im Abwasser erfasst werden. Da…
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https://onlinelibrary.wiley.com/doi/10.1002/jmv.26684
Challenger combined dataset (see Study 15)
[CombinedDataset.xlsx](https://github.com/user-attachments/files/17624541/CombinedDataset.xlsx)
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There is a growing need for people to assign their sequences to clades and do some simple QC. In the longer term, we also want to support running augur on SARS-CoV-2 data in the cloud. I imagine a col…
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Hi there,
I created a PanGraph of 200 SARS-CoV-2 sequences using FASTA sequences as input, and it seems that eleven of them aren't represented incorrectly in the JSON file. I have uploaded the data…