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Hi,
Thanks for writing and sharing this really neat way to work with SQLite3 databases.
Context : I've rename a Git repository but Magit Forge is still using the old name and I can't get Issues/…
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Hi there, I am trying to test utrrates tool on my data.
I used
`alleyoop rates`
OK, and it produced boxplot as expected. The code for your reference was:
```
#!/bin/bash
module load minicon…
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Hi,
running
```
nf-core/slamseq v1.0.0
Container: singularity - nfcore/slamseq:1.0.0
```
leads to
```
Error executing process > 'gtf2bed (genes.gtf)'
Caused by:
Process `gtf2bed (gene…
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I am trying to run a slamseq pipeline using `test` profile, but it hangs with the following message:
```
ERROR ~ No such variable: Exception evaluating property 'reads' for nextflow.util.ArrayTupl…
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Dear Tobias,
When I checked the counts file, I saw that the length of a UTR reported by slamseq is different with its length reported on UCSC.
For example, see the A1BG in my count file and UCSC;
…
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We have funded three positions at 0.5 FTE for six months.
A short blog post can be made with an abstract summarising each of the funded proposals. We can use the material from the submissions
+ …
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Quick question/suggestion: is there a way to install hisat-3n via conda or plans to make a hisat-3n conda recipe? Would be very helpful for integrating into Snakemake alignment workflows
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**Create a global parameters list**
Terminology between pipelines and shared assets can differ. To help preserve shared content and familiarity between pipelines, subworkflows and modules, it would…
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Hi there,
I am trying to execute slamdunk with samplesheet, and I am running into a problem - the reads are not used correctly as an input.
If I run the pipeline with the name of the file it wo…
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Hi,
I am dealing with quant-seq data, and I was wondering if I should use "-e" or not, also can you explain the description of "-e" in the DOCS, "Deactivates NextGenMap’s SLAMSeq alignment setting…