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Thanks for this amazing tool!
## Description
I have an sdata object with more than one image (MERSCOPE data with 7 z slices), and I used Baysor trough the sopa pipeline for segmentation. When run…
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I have made doodler python conda environments following the posted instructions (py38) as well as envs based on python versions 3.7, 3.9, and 3.10. I also trialled firefox, chrome and edge browsers. I…
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Aim is to use SpatialData is the data storage backend underlying the SPARCS workflow. This allows us to interface with many existing software solutions and build up on the existing software frameworks…
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Hi,
First, thanks a lot for creating this package - it has been fantastic for the non-rigid registration of MxIF, HE and CODEX data.
I am reaching out because I've encountered an issue when tran…
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[WSI directory](https://dsa.rc.ufl.edu/#collection/66844a54050c5f92f05d9f63/folder/668567806b968422781c67f3)
[Batch process](https://dsa.rc.ufl.edu/#job/668b31f0dbe4a8eb5249b310)
[Failed job](https:…
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### Description
Thanks to the *wandb.Image* class, we are able to log segmentation mask during training. This tool is amazing. It can be better if we can display pixels which have a confidence superi…
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Hi there,
I recently explored the FUSION web platform and was highly impressed by its capabilities in integrating WSI with omics data. I am interested in understanding whether the analytical processe…
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Image display data refuses to update when an image is opened with segmentation. The image must be reselected in the 'Files' tab in order to allow display data to be updated.
![Capturenew](https:/…
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In this issue, I use the segmentation of the lesions on the spinal cord after cropping the images (issue #37 ).
The analysis of the segmentations accounts for the following:
- [x] Identifying a …
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Hello,
Thank you for sharing your code.
I often use a sliding window method to inference a large image.
When I saw your ttach code, I thought it would be better to use FiveCrops or TenCrops for…