MannLabs scPortrait issues

MannLabs / scPortrait

https://mannlabs.github.io/scPortrait/html/index.html

Apache License 2.0

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issues

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automate documentation building

#91 sophiamaedler opened 1 week ago
0
Update the example notebooks

#90 namsaraeva closed 1 week ago
0
Added Favicon to Docs

#89 nik-as closed 1 week ago
0
Fix bugs in datasets.py

#88 namsaraeva closed 1 week ago
0
Update README.md

#87 sophiamaedler closed 2 weeks ago
0
fix bug in project

#86 namsaraeva closed 2 weeks ago
0
Clearer Python version pin

#85 Zethson closed 1 month ago
1
implement pre-commit rules

#84 sophiamaedler closed 1 month ago
1
Row compression for parsing generates highest row numbers instead of lowest

#83 sophiamaedler opened 1 month ago
0
ChannelSelector num_channels parameter

#82 namsaraeva opened 1 month ago
2
BUG: incorrect generation of missing tiles

#81 sophiamaedler opened 1 month ago
1
improve sdata io operations

#80 sophiamaedler closed 1 month ago
1
Add pre-commit + fix mypy

#79 Zethson closed 1 month ago
0
correct link to example notebooks

#78 sophiamaedler closed 1 month ago
0
Improve single-cell dataset data loaders

#77 sophiamaedler closed 1 month ago
1
refactor HDF5singlecellDataset code

#76 sophiamaedler opened 1 month ago
0
fix segmentation shape problem in the selection pipeline

#75 namsaraeva closed 1 month ago
0
Update requirements_dev.txt

#74 namsaraeva opened 1 month ago
0
Update documentation

#73 sophiamaedler closed 1 month ago
0
HDF5SingleCellDataset should throw en error when the specified file to extract from does not exist

#72 nik-as closed 1 month ago
0
HDF5SingleCellDataset should give an error when out of bounds indices are provided

#71 nik-as closed 1 month ago
0
Substitute example and model files with dataloaders

#70 namsaraeva closed 1 month ago
0
Fix build docs

#68 namsaraeva closed 1 month ago
1
rename classification to featurization

#67 sophiamaedler opened 1 month ago
0
Update requirements.txt

#66 namsaraeva closed 2 months ago
1
add additional code modules for stitching and parsing + refactor repo structure

#65 sophiamaedler closed 2 months ago
0
update documentation

#64 sophiamaedler opened 2 months ago
0
ashlar requires scikit-image < 0.20

#63 sophiamaedler closed 2 months ago
1
java dependency from pynius

#62 sophiamaedler opened 2 months ago
1
graph_tool dependency

#61 sophiamaedler closed 2 months ago
1
Add download instance and dataloaders

#60 namsaraeva closed 1 month ago
1
Create CODE_OF_CONDUCT.md

#59 namsaraeva closed 2 months ago
0
Refactor docs_source/

#58 namsaraeva closed 2 months ago
1
Remove environment.yml file

#57 namsaraeva closed 2 months ago
0
refactor to scPortrait

#56 sophiamaedler closed 2 months ago
0
Refactor the package to the new name scPortrait

#55 namsaraeva closed 2 months ago
0
refactoring to new repository name

#54 sophiamaedler closed 2 months ago
0
Review requirements.txt

#53 namsaraeva opened 2 months ago
5
Create pyproject.toml and LICENSE

#52 namsaraeva closed 2 months ago
1
Upload existing datasets to Zenodo and move docs

#51 namsaraeva opened 2 months ago
0
Tissue Region masking in scPortrait

#50 sophiamaedler opened 2 months ago
5
slow resolving of sharding

#49 sophiamaedler opened 2 months ago
0
Added benchmarking to the segmentation pipeline

#48 namsaraeva closed 2 months ago
0
Features to implement for spatialdata

#47 sophiamaedler opened 3 months ago
0
make classification directory first at run not at init

#46 sophiamaedler opened 3 months ago
0
added dimensionality check to fix the bug

#45 namsaraeva closed 3 months ago
0
sdata input images always saved as rgb

#44 sophiamaedler closed 2 months ago
1
Coding best practices

#43 Zethson opened 3 months ago
1
cell_ids are not saved to sdata file

#42 sophiamaedler opened 3 months ago
1
CZI reader for loading input images

#41 sophiamaedler opened 3 months ago
2