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The most commonly used job scheduler with Singularity or bioinformatics analysis jobs is Slurm. Here are its benefits:
- load balancing between multiple nodes
- limiting ram/process job size
- …
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Add support for SLURM job scheduler.
bjpop updated
5 years ago
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**Software Versions**
Snakemake 8.16.0
snakemake-executor-plugin-slurm 0.9.0
slurm 23.11.7
**Describe the bug**
I have recently moved to Snakemake v8.16 and have been trying to execute…
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### Motivation: Why do you think this is important?
[Slurm](https://slurm.schedmd.com/overview.html) is a widely used workload management system in many HPC (High-Performance Computing) compute clust…
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Hello, I'm working with a graduate student trying to use QCxMS on our HPC. We're on version 5.2.1. I'm working from the instructions found here:
https://xtb-docs.readthedocs.io/en/latest/qcxms_doc/…
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Hey AutoMD team,
we have it working now , It works through stage 1-10. From stage 3-10 as it will be using a GPU , it creates a slurm job for every stage , is there a way to tell it to run all 7 gpu…
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**Is your feature request related to a problem? Please describe.**
Hello. I am a developer of Bitextor (https://github.com/bitextor/bitextor), which is based on Snakemake, and we are having issues ru…
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i am trying to create a sclurm cluster on kubernetes (azure kubernetes service). but the slurmd pod keeps crashing giving error "Couldn't find the specified plugin name for cgroup/v2 looking at a…
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Can we run Dask Jobqueue outside the SLURM system (e.g. on SRC) and have workers submitted to SLURM? Dask jobqueue uses `sbatch`/`scancel` to manage jobs, can one can provide custom commands that invo…
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In the [documentation](https://docs.vscentrum.be/leuven/genius_quick_start.html#running-debug-jobs) all examples use `ntasks` or `n` to specify the number of CPUs needed per GPU. This generally works …