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Hello Jiabo Wang, I want to know how I get PVE result For each SNP, because the output of PVE file is only for P values
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Hello,
First, thanks for amazing project and issue resolution.
I'm wondering if the message "Mean chi^2 of SNPs used to estimate Omega is low for some SNPsMTAG may not perform well in this situa…
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Hi! Thank you for this new program! Could you explain me why I get the error "sorry, Dude. Didn't generate enough snps." during preprocessing?
The error occurs using the function `sample_ts` with …
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After running CRISPRme version 2.1.5 on spacer `sc1617.txt` (`"CTAACAGTTGCTTTTATCACNNN"`) using the tutorial provided scripts, we are observed instances where multiple SNPs are being reported for the …
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#### Description:
I encountered an issue when running the `midas2 merge_snps` command. The process has been running for several days without noticeable progress. The log file seems to show repeated "…
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Hi,
I have a question about the background assumptions of BA3-SNPs. I couldn't find anything in the documentation to answer my question but apologies if it is there and I just missed it. Or perhap…
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### Which API Provider are you using?
Ollama
### Which Model are you using?
qwen2.5:32b
### What happened?
Anytime Cline executes a command, the command executes but never returns control back to…
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Dear
I am trying to do allelic analysis Hic data getting same error G2 is mapping reads are zero and iced normalisation step getting error. I used bellow command to run analysis. non allelic analysi…
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In the Step 5 - Single Nucleotide Variant calling cell by cell,
Could you tell me what the role of the SNPs descriptor file is?
Does it is the SNP calling results at the overall sample level, or is…
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The latest version of trident has added a validation that the `NrSNPs` column is a value above 0.
While I agree that check makes a lot of sense, this requirement is not present in the janno_columns…