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czbiohub-sf
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MIDAS
Metagenomic Intra-Species Diversity Analysis (MIDAS)
MIT License
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KeyError: 'chunks_centroids' during MIDAS database initialization
#141
zfsh
opened
2 weeks ago
2
custom dabasebase build
#140
nayeon1994
opened
3 weeks ago
1
rename to mida version 3
#139
zhaoc1
closed
1 month ago
0
Errors when download the MIDASdb
#138
yejunbin
closed
1 month ago
3
Query regarding specificity of the tool
#137
sahilrishav2
closed
2 months ago
16
midasv3 chunk size error with midas2 database init
#136
uel3
closed
3 months ago
2
Support for bioconda/singularity/nextflow
#135
uel3
closed
1 month ago
1
midas version3 rc3 minor updates
#134
zhaoc1
closed
4 months ago
0
Handle 0 gene hits case while counting up BAM results for a species
#133
bsmith89
closed
4 months ago
0
2024-03-05-v3rc3
#132
zhaoc1
closed
4 months ago
0
2024-03-04 v3rc2
#131
zhaoc1
closed
4 months ago
0
midas version 3 rc 1
#130
zhaoc1
closed
5 months ago
0
Error in building a customised database
#129
sahilrishav2
closed
5 months ago
4
Feature request: Pre-select species "quantitative" genes based on the MIDAS2DB reference database
#128
bsmith89
opened
6 months ago
0
Feature request: Change how gene depth is estimated
#127
bsmith89
closed
4 months ago
4
error in merge snps
#126
sophiejwalton
closed
7 months ago
3
Update funannnot_parser
#125
zhaoc1
closed
7 months ago
0
MIDAS2 v1.1.1 major updates
#124
zhaoc1
closed
8 months ago
0
Errors while take a more customized approach to database loading the database
#123
qinghong2019
closed
8 months ago
0
midas2 v1.0.9
#122
qinghong2019
closed
9 months ago
5
Install from source needs additional channel
#121
mtisza1
closed
10 months ago
3
How to keep the alignment?
#120
FranckLejzerowicz
closed
10 months ago
2
v1.1.0
#119
zhaoc1
closed
10 months ago
0
2023 08 31 py3.9
#118
zhaoc1
closed
11 months ago
0
scratch dir related
#117
zhaoc1
closed
11 months ago
0
Update codes related to scratch dir
#116
zhaoc1
closed
11 months ago
0
2023 07 27/build midasdb
#115
zhaoc1
closed
11 months ago
0
add bash script for recluster centroids
#114
zhaoc1
closed
1 year ago
0
add import_genome subcommand
#113
zhaoc1
closed
1 year ago
0
UHGG database download error
#112
clairedubin
closed
1 year ago
2
Add pan-genomes contigs length
#111
zhaoc1
closed
1 year ago
0
add scratch dir option for HPC compute
#110
zhaoc1
closed
1 year ago
0
2023 06 23 recluster
#109
zhaoc1
closed
1 year ago
0
merge_snps
#108
luoqingqing777
closed
1 year ago
2
merge function writing chunks in database folder which may not be writeable
#107
FranckLejzerowicz
closed
1 year ago
4
bwa-meme
#106
nick-youngblut
closed
1 year ago
8
Update species_module.rst
#105
FranckLejzerowicz
closed
1 year ago
1
Use bining data as ref-genome
#104
BaylorLyu
closed
1 year ago
2
merge_snp issue still exist
#103
BaylorLyu
closed
1 year ago
9
how to build ughh database?
#102
BaylorLyu
closed
1 year ago
1
newdb related
#101
zhaoc1
closed
2 years ago
0
Update glossary.rst
#100
zhaoc1
closed
2 years ago
0
2022 06 16/docs patch
#99
zhaoc1
closed
2 years ago
0
Update glossary.rst
#98
zhaoc1
closed
2 years ago
0
Update advanced_topics.rst
#97
zhaoc1
closed
2 years ago
0
Update output.rst
#96
zhaoc1
closed
2 years ago
0
Update output.rst
#95
zhaoc1
closed
2 years ago
0
Update download_midasdb.rst
#94
zhaoc1
closed
2 years ago
0
Update species_module.rst
#93
zhaoc1
closed
2 years ago
0
Update overview.rst
#92
zhaoc1
closed
2 years ago
0
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