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czbiohub-sf
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MIDAS
Metagenomic Intra-Species Diversity Analysis (MIDAS)
MIT License
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Update download_midasdb.rst
#94
zhaoc1
closed
2 years ago
0
Update species_module.rst
#93
zhaoc1
closed
2 years ago
0
Update overview.rst
#92
zhaoc1
closed
2 years ago
0
Update quickstart.rst
#91
zhaoc1
closed
2 years ago
0
2022 06 15/rename midas2
#90
zhaoc1
closed
2 years ago
2
add docs
#89
zhaoc1
closed
2 years ago
0
merge_snps error
#88
luoqingqing777
closed
1 year ago
8
run_species error
#87
luoqingqing777
closed
2 years ago
0
midasdb gtdb alive on the server
#86
zhaoc1
closed
2 years ago
0
midas2 database: does not list and download MIDAS DB
#85
snayfach
closed
2 years ago
2
midasdb uhgg ready on ucsf server
#84
zhaoc1
closed
2 years ago
0
download failed
#83
snayfach
closed
2 years ago
12
add md5sum check
#82
zhaoc1
closed
2 years ago
0
Add feature of downloading files from HTTPS server instead of S3
#81
zhaoc1
closed
2 years ago
0
v0.9.5
#80
zhaoc1
closed
2 years ago
0
add ignore ambiguous sites
#79
zhaoc1
closed
2 years ago
0
v0.9.3 migrate s3 bucket
#78
zhaoc1
closed
2 years ago
0
add conda pkg recipe
#77
zhaoc1
closed
2 years ago
0
python packaging related
#76
zhaoc1
closed
2 years ago
0
update midas2.0 print
#75
zhaoc1
closed
2 years ago
0
Add database download/list command
#74
zhaoc1
closed
2 years ago
0
Rename repo from iggtools to MIDAS2.0
#73
zhaoc1
closed
2 years ago
0
2022-03-02 chunyu/conda docker
#72
zhaoc1
closed
2 years ago
0
cleanup comments
#71
zhaoc1
closed
2 years ago
0
clean up comments
#70
zhaoc1
closed
2 years ago
0
minor updates
#69
zhaoc1
closed
2 years ago
0
major updates from large sample amounts
#68
zhaoc1
closed
2 years ago
0
add analysis-ready option for bamfile
#67
zhaoc1
closed
2 years ago
0
changes related to chunks and MIDASDB
#66
zhaoc1
closed
2 years ago
0
pylint docker related updates
#65
zhaoc1
closed
2 years ago
0
json int key into string
#64
zhaoc1
closed
2 years ago
0
minor updates to the params
#63
zhaoc1
closed
2 years ago
0
upgrade species flow from v0.33
#62
zhaoc1
closed
2 years ago
0
update merge framework for v0.32
#61
zhaoc1
closed
2 years ago
0
Chunyu/2021 08 31 species
#60
zhaoc1
closed
3 years ago
0
Add --no-sign-request flag to 'aws s3 cp'
#59
bsmith89
closed
3 years ago
2
Chunyu/2021 07 23 speed
#58
zhaoc1
closed
3 years ago
0
minor updates for speed improvements
#57
zhaoc1
closed
3 years ago
0
majors updates
#56
zhaoc1
closed
3 years ago
0
major updates
#55
zhaoc1
closed
3 years ago
0
update genes flow
#54
zhaoc1
closed
3 years ago
0
Chunyu/20210310 genes
#53
zhaoc1
closed
3 years ago
0
redesign chunks for the SNPs workflows
#52
zhaoc1
closed
3 years ago
0
compare with MIDAS1.0 using midas_db_v1.2
#51
zhaoc1
closed
3 years ago
0
minor change to build_bowtie2_db
#50
zhaoc1
closed
3 years ago
0
update writing style in midas_merge_snps
#49
zhaoc1
closed
3 years ago
0
add performance prints to unit test
#48
zhaoc1
closed
3 years ago
0
exception handling in multiprocessing
#47
zhaoc1
closed
2 years ago
1
add gene annotation to midas_merge_snps
#46
zhaoc1
closed
3 years ago
0
[clean up] combine build_gene_features with annotate_genes
#45
zhaoc1
closed
2 years ago
0
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