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Hi,
I have a question about Mantel test and Pearson's correlation.
I have a taxonomic profile of soil samples, I have calculated the alpha and beta diversity using Microeco. Then I ran a differe…
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`create_KST()` will need to be refactored for changes in formatting in the new version of the Keys that is forthcoming. I have a proof copy for testing, not sure on timeline for public release
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soil_taxonomic/local classification method
soil_taxonomic/local classification
soil_type
soil type method
soil_taxonomic/FAO classification
~link to classification information~
-- Removed?
These…
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Hi brendaf
I have a dataset of ~140,000 ASVs that I want to tun through optimotu. The ASVs have been assigned taxonomy. Do you have any examples or recommendations for preparing the ASVs before run…
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- **ICOMLAC** International Committee on Low Activity Clays https://www.nrcs.usda.gov/wps/portal/nrcs/detail/soils/survey/class/taxonomy/?cid=stelprdb1262264
- **ICOMMOTR** International Committee …
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## Sub-Issues:
* possibly normalize dictionaries such that each term is tied to a master "root" (this is complicated because the same roots can be used in slightly different ways across levels of S…
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I am trying to write phyloseq object into csv file but it shows error?
physeq_soil
phyloseq-class experiment-level object
otu_table() OTU Table: [ 67405 taxa and 27 samples ]
sample_da…
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Hi @jhpoelen
I am trying to query globi for trophic interactions of Astigmata using the following query:
`https://api.globalbioticinteractions.org/taxon/Astigmata/eats?type=csv`
Here are the t…
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### Running list of difficult Mongo queries
https://docs.google.com/spreadsheets/d/1a9cN9ZDyjVOp6NtHiaUlpP_92sMInZtQV-Q-L5iWcOk/edit?usp=sharing
Please add/edit edit Google Sheet
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In wor…
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Hi @Meghana9854 @roseedwin , I just came across your amazing paper, and I wanted to implement the approach you proposed for my soil shotgun data. Looking upon your methodology, it seem you relied on a…