microbiomedata nmdc-runtime issues

microbiomedata / nmdc-runtime

Runtime system for NMDC data management and orchestration

https://microbiomedata.github.io/nmdc-runtime/

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issues

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Remove reference to nonexistent `tests2` directory

#794 eecavanna opened 6 hours ago
0
Add "Translators" subsystem as option in PR template

#793 eecavanna opened 2 days ago
0
Replace custom build system with Poetry

#792 eecavanna opened 2 days ago
3
Remove reference to nonexistent directory (`tests2`)

#791 eecavanna opened 2 days ago
1
[DRAFT] COMPARE 576 TO 696

#790 PeopleMakeCulture opened 3 days ago
0
Errors with GOLD ETL

#789 aclum opened 3 days ago
0
Replace deprecated `utcnow()` calls with `now(timezone.utc)`

#788 shreddd closed 13 hours ago
2
Explore migrating from pymongo to motor as an async python libary for mongodb

#787 mkshah605 opened 4 days ago
1
Work In Progress - 696 compile alldocs collection util

#786 mkshah605 opened 4 days ago
0
Deleting value from list with changesheets deletes all values

#785 aclum opened 5 days ago
0
Delete unused `tests2` directory

#784 shreddd closed 3 days ago
0
Workflow queries:run access for site_clients

#783 shreddd closed 4 days ago
0
Ensure basic validation occurs for updates via `POST /queries:run`

#782 dwinston closed 4 days ago
1
get off `python-jose` (switch to `PyJWT`) for more-likely upstream security patching

#781 dwinston opened 6 days ago
1
placeholder ticket for changes to MUTTS based on new L7 JGI metagenome metadata template

#780 aclum opened 1 week ago
2
Implement an API endpoint an admin can use to update a user's password

#779 eecavanna opened 1 week ago
0
Implement password reset flow for API users

#778 dwinston opened 1 week ago
4
navigating documentation was a bit difficult

#777 mslarae13 opened 1 week ago
2
Support for approved workflow clients to run updates

#776 shreddd closed 6 hours ago
3
Swagger UI shows "😱 Could not render response" when sending request to newly-updated Runtime instance

#775 aclum closed 1 week ago
6
API endpoint `/queries:run` allows people to submit queries that make data invalid

#774 eecavanna closed 4 days ago
1
Fix handling of GOLD and JGI IDs in submission data translator

#773 pkalita-lbl closed 1 week ago
1
migrate runtime status page to microbiomedata.org subdomain?

#772 dwinston opened 1 week ago
2
Add walthrough video of migration notebook to docs?

#771 dwinston closed 1 week ago
1
Bump `nmdc-schema` from `11.0.3` to `11.1.0` and sync transitive dependencies

#770 eecavanna closed 1 week ago
6
Cannot determine origin of Mongo index

#769 eecavanna opened 1 week ago
6
Bump `nmdc-schema` from v11.0.3 to v11.1.0

#768 eecavanna closed 1 week ago
1
Update PR template to include "Translators" as a subsystem option

#767 eecavanna opened 1 week ago
0
Move from piptools -> poetry

#766 shreddd closed 1 week ago
2
Add unit tests targeting `alldocs`-related operations (e.g. creation)

#765 shreddd opened 1 week ago
1
fix: update .env load guidance

#764 dwinston closed 1 week ago
0
cleanup: remove obselete `version` attribute

#763 dwinston closed 1 week ago
0
cleanup: remove obsolete `version` attribute from docker compose yml files

#762 dwinston closed 1 week ago
0
Implement the `11.0.3`-to-`11.1.0` migration notebook

#761 eecavanna closed 1 week ago
1
Migrations: Implement notebook that runs the `11.0.3`-to-`11.1.0` migrators

#760 eecavanna closed 1 week ago
0
Update PR template to produce PR descriptions that are easier to read

#759 eecavanna closed 1 week ago
2
Update PR template to produce easier-to-read PR descriptions

#758 eecavanna closed 1 week ago
0
Migrations: Fix bug in "progress bar" logic and work around upstream memory leak

#757 eecavanna closed 2 weeks ago
0
Modify GOLD ETL code to check existing records and only create missing records.

#756 aclum opened 2 weeks ago
2
[Parent] Make nmdc-runtime development environment setup easier

#755 PeopleMakeCulture opened 2 weeks ago
2
paginate queries:run

#754 dwinston opened 2 weeks ago
0
Update submission portal to mongo ETL to support specifying external data

#753 aclum opened 2 weeks ago
0
fix: check for LinkML base type "Decimal" on loading changesheet

#752 dwinston closed 2 weeks ago
0
Migrations: Validation progress bar logic divides by zero when collection is small (oops)

#751 eecavanna closed 2 weeks ago
0
Migrations: Update notebook to perform LinkML validation and allow database name configuration

#750 eecavanna closed 3 weeks ago
0
Migrations: Update migration notebook so database name is configurable (not hard-coded to `nmdc`)

#749 eecavanna closed 3 weeks ago
0
Document the `/nmdcschema/typecodes` API endpoint (reverse engineered)

#748 eecavanna closed 3 weeks ago
1
Add description to `/nmdcschema/typecodes` API endpoint

#747 eecavanna closed 3 weeks ago
0
Migrations: Update migration notebook to use linkml's validator instead of jsonschema's validator

#746 eecavanna closed 3 weeks ago
0
Migrations: Update notebook to omit Mongo credentials from commands when authentication is disabled

#745 eecavanna closed 3 weeks ago
0