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microbiomedata
/
nmdc-runtime
Runtime system for NMDC data management and orchestration
https://microbiomedata.github.io/nmdc-runtime/
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`/metadata/json:validate` endpoint returns HTTP 500 error in Napa and prod (not dev)
#524
aclum
closed
1 month ago
6
Allow user to perform `$unset` operations via `/queries:run` endpoint
#523
aclum
opened
1 month ago
4
Mermaid reports "Parse error" and does not display diagram in Minter docs
#522
eecavanna
opened
1 month ago
0
[DRAFT] Merge jupyter notebooks for 1) mongo validation and ref integrity check && 2) RDF gen
#521
PeopleMakeCulture
closed
1 week ago
9
Minter responds with HTTP 500 and raw Python stack trace
#520
eecavanna
opened
1 month ago
0
Migrations: Implement notebook that runs all Berkeley schema migrators
#519
eecavanna
opened
1 month ago
3
Code for NMDC to NCBI export
#518
sujaypatil96
closed
5 days ago
4
Validation differs between `json:validate` and `json:submit` API endpoints
#517
aclum
opened
1 month ago
0
Update analytics middleware to log requests lacking a `user-agent` header
#516
eecavanna
closed
1 month ago
3
API returns HTTP 500 when request lacks `User-Agent` header (Analytics middleware raises `KeyError`)
#515
eecavanna
closed
1 month ago
3
Runtime uses `jsonschema` package without listing it as a dependency in `main.in`
#514
eecavanna
opened
1 month ago
0
Remove obsolete code, env vars, container related to TerminusDB
#513
eecavanna
closed
3 weeks ago
0
Remove references to Digital Ocean environment variables (if no longer used in practice)
#512
eecavanna
opened
1 month ago
2
Migrations: JSON Schema version generated by LinkML contradicts validator version used by notebook
#511
eecavanna
opened
1 month ago
0
Import database names from centralized source
#510
eecavanna
opened
2 months ago
1
Cannot delete multiple `functional_aggregation_agg` documents via single API request
#509
aclum
opened
2 months ago
10
Loosen CORS restrictions to allow access from browser-based clients
#508
eecavanna
closed
1 month ago
2
load optional info banner via env var
#507
dwinston
closed
2 months ago
1
Add banner to swagger ui
#506
PeopleMakeCulture
closed
2 months ago
3
Upgrade to nmdc-schema 10.2.0
#505
pkalita-lbl
closed
2 months ago
0
Explore supporting bulk download via runtime API
#504
PeopleMakeCulture
opened
2 months ago
0
Develop NMDC to NCBI export code
#503
aclum
closed
5 days ago
12
GOLD ingest pipeline data checks
#502
aclum
opened
2 months ago
0
[WIP DO NOT MERGE] add fair-test.yml and fair-test-test.py
#501
PeopleMakeCulture
opened
2 months ago
0
fix: remove unused file
#500
dwinston
closed
3 months ago
0
update docs for changesheet validator to include `remove` action
#499
PeopleMakeCulture
closed
3 months ago
0
changesheet validator throws error when using `remove item` for a single-value field
#498
PeopleMakeCulture
closed
3 months ago
1
fix(validation): allow any valid nmdc:Database to [/v1]/workflows/activities
#497
dwinston
closed
3 months ago
1
Set up Fuseki Server (Jing's NERSC SPIN training capstone)
#496
PeopleMakeCulture
opened
3 months ago
4
Migrations: Create notebook for running `10.0.0` to `10.1.2` migrator
#495
eecavanna
closed
3 months ago
1
Upgrade to nmdc-schema 10.1.4
#494
pkalita-lbl
closed
3 months ago
2
feat(style): use nmdc favicon
#493
dwinston
closed
3 months ago
0
Migrations: Fix invalid example notebook
#492
eecavanna
closed
3 months ago
1
Upgrade to nmdc-schema 10.1.2
#491
pkalita-lbl
closed
3 months ago
1
Migrations: Example migration notebook is not a valid Jupyter notebook
#490
eecavanna
closed
3 months ago
0
GitHub Action workflow ran for 6 hours (before being terminated)
#489
eecavanna
closed
3 months ago
1
graph API for nmdc-schema metadata
#488
dwinston
opened
3 months ago
0
Migrations: Implement bookkeeping
#487
eecavanna
closed
3 months ago
1
Bump `nmdc-schema` from `10.0.0` to `10.1.0`
#486
aclum
closed
3 months ago
5
feat: point to schema root
#485
dwinston
closed
4 months ago
0
Extract Minter into an independent service
#484
eecavanna
opened
4 months ago
5
FAIR Evaluation
#483
PeopleMakeCulture
opened
4 months ago
11
Allow aggregation commands from a public endpoint
#482
aclum
closed
2 months ago
1
auto-build graphdb instances nightly on SPIN
#481
PeopleMakeCulture
closed
3 months ago
2
Merge addtnl comments
#480
PeopleMakeCulture
closed
4 months ago
0
478 refactor v1 workflows activities endpoint
#479
PeopleMakeCulture
closed
4 months ago
0
/v1/workflows/activities endpoint adds empty keys with null values to mongo
#478
aclum
closed
4 months ago
22
Endpoint `POST /users` responds with HTTP 500 when username already exists
#477
eecavanna
opened
4 months ago
0
Branding: Swagger UI favicon is FastAPI logo (not NMDC logo)
#476
eecavanna
closed
3 months ago
1
Endpoint `GET /users/me` responds with HTTP 500 instead of HTTP 401
#475
eecavanna
opened
4 months ago
0
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