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**Describe the bug**
`spikeinterface.extract_waveforms` has an argument `sparse`. If this is `True` the waveform extractor will only return the waveforms on a subset of channels that it deems impor…
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Traceback (most recent call last):
File "D:\sjwlab\bxy\spikeinterface-main\examples\get_started\quickstart.py", line 64, in
sorting_KS2 = ss.run_sorter(sorter_name="kilosort2", recording=reco…
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Hello,
When running kilosort4 via spikeinterface, `CUDA out of memory error` occurs immediately after the first clustering.
The error still occurs when setting `clear_cache = True`. But not when …
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I have a problem. The error information is following:
```
Traceback (most recent call last):
File "/home/NITD/lxr/code/spike_sorting/run_sorter0913.py", line 628, in
start_sorting(manual,
…
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Hello,
I'm having trouble importing the si GUI in Jupyter notebook. I imported spikeinterface earlier: import spikeinterface.full as si, and followed all the steps in the November 2023 tutorial.
…
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This is related to
https://github.com/catalystneuro/neuroconv/issues/995
Check out the lines:
https://github.com/catalystneuro/roiextractors/blob/7592bbac765f19bcbf57b398c979fb9ee1f6c283/src/roie…
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notebook: /home/zhangdaohan20h / dredge-main / notebook/wulab_DREDge_ks2.ipynb
envs: kilosort4 in zhangdaohan20h
```python
import numpy as np
import matplotlib.pyplot as plt
import spikeinterface.ful…
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Hi Jean.
I am reading your notebooks.
I think you should use the new spiekinetrface as soon as possible.
If you need a call to help you on this I can.
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Running spykingcircus in docker mode (probably in regular mode as well) results in an error if there is a space in the path.
This probably relates to the shell command not putting the path in quote…
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It would be great to see one of [these docker files](https://hub.docker.com/u/spikeinterface) integrated, particularly kilosort 3, which requires a GPU.