issues
search
catalystneuro
/
roiextractors
Python-based module for extracting from, converting between, and handling optical imaging data from several file formats. Inspired by SpikeInterface.
https://roiextractors.readthedocs.io/en/latest/index.html
BSD 3-Clause "New" or "Revised" License
11
stars
6
forks
source link
issues
Newest
Newest
Most commented
Recently updated
Oldest
Least commented
Least recently updated
Bye bye spikeextractors
#349
h-mayorquin
closed
1 month ago
0
Remove wheel requirement and remove testing dependencies from the CI.
#348
h-mayorquin
closed
1 month ago
1
Add packaging to minimal with test
#347
CodyCBakerPhD
closed
1 month ago
2
Use lxml for Bruker xml parsing
#346
h-mayorquin
closed
1 month ago
2
Fix Bruker plane specification implementation through file_paths
#345
h-mayorquin
opened
1 month ago
2
optimize get streams for `BrukerTiffSinglePlaneImagingExtractor`
#344
h-mayorquin
closed
1 month ago
1
Fix bug in `BrukerTiffSinglePlaneImagingExtractor`
#343
h-mayorquin
closed
1 month ago
3
Change criteria for volumetric in Bruker tiff extractor
#342
h-mayorquin
closed
1 month ago
0
[Bug]: Incorrect bruker metadata parsing for single plane imaging
#341
mhturner
opened
1 month ago
9
Fix Failing Dailies
#340
pauladkisson
closed
1 month ago
0
Fix Update Testing Data Workflow
#339
pauladkisson
closed
1 month ago
3
Add extractor for BioFormats (CXD)
#338
weiglszonja
opened
1 month ago
2
API docs
#337
pauladkisson
closed
2 months ago
8
Refactor Workflows
#336
pauladkisson
closed
2 months ago
0
unshadow dict
#335
bendichter
closed
2 months ago
0
make static method static
#334
bendichter
closed
2 months ago
0
typing for NumpySegmentationExtractor
#333
bendichter
opened
2 months ago
0
add output typehints
#332
bendichter
closed
2 months ago
0
fix docstrings
#331
bendichter
closed
2 months ago
0
suite2p require essential files
#330
bendichter
closed
2 months ago
0
suite2p allowing for options=None
#329
bendichter
closed
2 months ago
0
add scan_line_rate, grid_spacing and origin_coords from scanimage metadata
#328
alessandratrapani
opened
2 months ago
0
BaseSegmentation class improvements
#327
CodyCBakerPhD
closed
2 months ago
0
fix inscopix dtype
#326
bendichter
closed
2 months ago
5
drop python 3.8
#325
bendichter
closed
2 months ago
4
Update testing.py types
#324
bendichter
closed
2 months ago
0
draft of multi-tiff multi-page imaging extractor
#323
bendichter
opened
2 months ago
9
add ThorImagingExtractor
#322
bendichter
opened
2 months ago
0
Fix Dailies and Python 3.12 Bug
#321
pauladkisson
closed
2 months ago
0
added dailies with email notifs
#320
pauladkisson
closed
2 months ago
5
[pre-commit.ci] pre-commit autoupdate
#319
pre-commit-ci[bot]
closed
2 months ago
0
Update-Testing-Data fix
#318
pauladkisson
closed
2 months ago
1
Update Workflows
#317
pauladkisson
closed
2 months ago
8
Remove `HAVE_SCIPY`
#316
h-mayorquin
opened
3 months ago
0
Close issue 117
#315
h-mayorquin
closed
3 months ago
3
[Github.CI] Update dev version from 0.5.8 to 0.5.9
#314
pauladkisson
closed
3 months ago
0
Update CHANGELOG.md for new release
#313
pauladkisson
closed
3 months ago
0
[Github.CI] Update dev version from 0.5.7 to 0.5.8
#312
pauladkisson
closed
3 months ago
0
[Github.CI] Update dev version from 0.5.7 to 0.5.8
#311
pauladkisson
closed
3 months ago
0
Fix Cron Bug with Assess-file-changes
#310
pauladkisson
closed
3 months ago
1
[pre-commit.ci] pre-commit autoupdate
#309
pre-commit-ci[bot]
closed
3 months ago
0
[Github.CI] Update dev version from 0.5.7 to 0.5.8
#308
pauladkisson
closed
3 months ago
1
[Github.CI] Update dev version from 0.5.7 to 0.5.8
#307
pauladkisson
closed
3 months ago
0
[Github.CI] Update dev version from 0.5.7 to 0.5.8
#306
github-actions[bot]
closed
3 months ago
0
[Github.CI] Update dev version from 0.5.7 to 0.5.8
#305
github-actions[bot]
closed
3 months ago
0
Fix Update Dev Version on Release Workflow
#304
pauladkisson
closed
3 months ago
0
Bump tj-actions/changed-files from 29.0.4 to 41.0.0 in /.github/workflows
#303
dependabot[bot]
closed
3 months ago
0
Update Changelog for v0.5.7 Release and add Changelog check for future work
#302
pauladkisson
closed
3 months ago
1
[Feature]: Depth Slice for VolumetricImagingExtractor
#301
pauladkisson
opened
3 months ago
0
[pre-commit.ci] pre-commit autoupdate
#300
pre-commit-ci[bot]
closed
3 months ago
0
Next