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catalystneuro
/
roiextractors
Python-based module for extracting from, converting between, and handling optical imaging data from several file formats. Inspired by SpikeInterface.
https://roiextractors.readthedocs.io/en/latest/index.html
BSD 3-Clause "New" or "Revised" License
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updated dev version and changelog
#381
pauladkisson
closed
1 week ago
5
Remove Update Version Workflow
#380
pauladkisson
closed
1 week ago
0
Add `get_times()` method to imaging classes
#379
h-mayorquin
opened
2 weeks ago
2
Add support for background components in FrameSliceSegmentationExtractor
#378
alessandratrapani
closed
4 weeks ago
0
Improve error when settings timestamps
#377
h-mayorquin
closed
1 month ago
1
[Bug]: mismatch between timestamps and frames in miniscope video
#376
laurelrr
opened
1 month ago
6
Discuss introducing a new trace for background activity in SegmentationExtractor
#375
alessandratrapani
opened
1 month ago
1
Refactor Miniscope Extractor Naming
#374
h-mayorquin
closed
1 month ago
3
Fixed bug with ScanImage's parse_metadata so that it works properly when hStackManager is disabled
#373
pauladkisson
closed
1 month ago
7
[Bug]: invalid literal for int() 'Inf' for SI.hStackManager.framesPerSlice #1108
#372
pauladkisson
closed
1 month ago
0
Compound extractors
#371
pauladkisson
opened
1 month ago
0
[pre-commit.ci] pre-commit autoupdate
#370
pre-commit-ci[bot]
closed
1 month ago
0
Tools
#369
pauladkisson
opened
1 month ago
0
Add Minian segmentation extractor
#368
alessandratrapani
opened
1 month ago
4
Add Base extractor
#367
pauladkisson
opened
1 month ago
0
Update SegmentationExtractor
#366
pauladkisson
opened
1 month ago
0
Update ImagingExtractor
#365
pauladkisson
opened
1 month ago
2
Removed unnecessary import checks for scipy, h5py, and zarr
#364
pauladkisson
closed
2 months ago
3
Added depth_slice for volumetricImagingExtractors
#363
pauladkisson
closed
1 month ago
1
Add seed to dummy generators
#362
h-mayorquin
closed
2 months ago
0
Added warning for mid-cycle split for multifile scanimage
#361
pauladkisson
opened
2 months ago
1
Added specific error message for single-frame scanimage data
#360
pauladkisson
closed
2 months ago
0
[Github.CI] Update dev version from 0.5.9 to 0.5.10
#359
pauladkisson
closed
2 months ago
0
Update requirements-full.txt to fix security vulnerability
#358
pauladkisson
closed
2 months ago
0
updated requirements to include cv2 and update dev testing locations for neuroconv
#357
pauladkisson
closed
2 months ago
0
Discuss Miniscope input folder expected structure
#356
h-mayorquin
opened
2 months ago
11
Correct some spelling errors in `generate_dummy_segmentation_extractor`
#355
h-mayorquin
closed
2 months ago
0
Update Check Docstrings workflow to use new github action
#354
pauladkisson
closed
2 months ago
0
Improve error message for tiff imaging extractor
#353
h-mayorquin
closed
3 months ago
0
Provide more friendly memory error for `TiffImagingExtractor`
#352
h-mayorquin
opened
3 months ago
4
Protect import in sima
#351
h-mayorquin
closed
3 months ago
1
[pre-commit.ci] pre-commit autoupdate
#350
pre-commit-ci[bot]
closed
3 months ago
0
Bye bye spikeextractors
#349
h-mayorquin
closed
5 months ago
0
Remove wheel requirement and remove testing dependencies from the CI.
#348
h-mayorquin
closed
5 months ago
1
Add packaging to minimal with test
#347
CodyCBakerPhD
closed
5 months ago
2
Use lxml for Bruker xml parsing
#346
h-mayorquin
closed
5 months ago
2
Fix Bruker plane specification implementation through file_paths
#345
h-mayorquin
opened
5 months ago
2
optimize get streams for `BrukerTiffSinglePlaneImagingExtractor`
#344
h-mayorquin
closed
5 months ago
1
Fix bug in `BrukerTiffSinglePlaneImagingExtractor`
#343
h-mayorquin
closed
5 months ago
3
Change criteria for volumetric in Bruker tiff extractor
#342
h-mayorquin
closed
5 months ago
0
[Bug]: Incorrect bruker metadata parsing for single plane imaging
#341
mhturner
opened
5 months ago
9
Fix Failing Dailies
#340
pauladkisson
closed
5 months ago
0
Fix Update Testing Data Workflow
#339
pauladkisson
closed
5 months ago
3
Add extractor for BioFormats (CXD)
#338
weiglszonja
opened
5 months ago
2
API docs
#337
pauladkisson
closed
6 months ago
8
Refactor Workflows
#336
pauladkisson
closed
6 months ago
0
unshadow dict
#335
bendichter
closed
6 months ago
0
make static method static
#334
bendichter
closed
6 months ago
0
typing for NumpySegmentationExtractor
#333
bendichter
opened
6 months ago
0
add output typehints
#332
bendichter
closed
6 months ago
0
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