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catalystneuro
/
roiextractors
Python-based module for extracting from, converting between, and handling optical imaging data from several file formats. Inspired by SpikeInterface.
https://roiextractors.readthedocs.io/en/latest/index.html
BSD 3-Clause "New" or "Revised" License
12
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7
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fix docstrings
#331
bendichter
closed
6 months ago
0
suite2p require essential files
#330
bendichter
closed
6 months ago
0
suite2p allowing for options=None
#329
bendichter
closed
6 months ago
0
add scan_line_rate, grid_spacing and origin_coords from scanimage metadata
#328
alessandratrapani
opened
6 months ago
0
BaseSegmentation class improvements
#327
CodyCBakerPhD
closed
6 months ago
0
fix inscopix dtype
#326
bendichter
closed
6 months ago
5
drop python 3.8
#325
bendichter
closed
6 months ago
4
Update testing.py types
#324
bendichter
closed
6 months ago
0
draft of multi-tiff multi-page imaging extractor
#323
bendichter
opened
6 months ago
9
add ThorImagingExtractor
#322
bendichter
opened
6 months ago
0
Fix Dailies and Python 3.12 Bug
#321
pauladkisson
closed
6 months ago
0
added dailies with email notifs
#320
pauladkisson
closed
6 months ago
5
[pre-commit.ci] pre-commit autoupdate
#319
pre-commit-ci[bot]
closed
6 months ago
0
Update-Testing-Data fix
#318
pauladkisson
closed
7 months ago
1
Update Workflows
#317
pauladkisson
closed
6 months ago
8
Remove `HAVE_SCIPY`
#316
h-mayorquin
closed
2 months ago
0
Close issue 117
#315
h-mayorquin
closed
7 months ago
3
[Github.CI] Update dev version from 0.5.8 to 0.5.9
#314
pauladkisson
closed
7 months ago
0
Update CHANGELOG.md for new release
#313
pauladkisson
closed
7 months ago
0
[Github.CI] Update dev version from 0.5.7 to 0.5.8
#312
pauladkisson
closed
7 months ago
0
[Github.CI] Update dev version from 0.5.7 to 0.5.8
#311
pauladkisson
closed
7 months ago
0
Fix Cron Bug with Assess-file-changes
#310
pauladkisson
closed
7 months ago
1
[pre-commit.ci] pre-commit autoupdate
#309
pre-commit-ci[bot]
closed
7 months ago
0
[Github.CI] Update dev version from 0.5.7 to 0.5.8
#308
pauladkisson
closed
7 months ago
1
[Github.CI] Update dev version from 0.5.7 to 0.5.8
#307
pauladkisson
closed
7 months ago
0
[Github.CI] Update dev version from 0.5.7 to 0.5.8
#306
github-actions[bot]
closed
7 months ago
0
[Github.CI] Update dev version from 0.5.7 to 0.5.8
#305
github-actions[bot]
closed
7 months ago
0
Fix Update Dev Version on Release Workflow
#304
pauladkisson
closed
7 months ago
0
Bump tj-actions/changed-files from 29.0.4 to 41.0.0 in /.github/workflows
#303
dependabot[bot]
closed
7 months ago
0
Update Changelog for v0.5.7 Release and add Changelog check for future work
#302
pauladkisson
closed
7 months ago
1
[Feature]: Depth Slice for VolumetricImagingExtractor
#301
pauladkisson
closed
2 months ago
0
[pre-commit.ci] pre-commit autoupdate
#300
pre-commit-ci[bot]
closed
7 months ago
0
[Feature]: Support for mid-cycle splits of ScanImageTiff files
#299
pauladkisson
opened
8 months ago
0
[Bug]: ScanImageTiffSinglePlaneImagingExtractor cannot read files with only 1 frame each
#298
pauladkisson
closed
2 months ago
0
Multifile scanimage
#297
pauladkisson
closed
7 months ago
9
[Feature]: Dedicated MultiFile ScanImage ImagingExtractors
#296
pauladkisson
closed
7 months ago
0
[pre-commit.ci] pre-commit autoupdate
#295
pre-commit-ci[bot]
closed
8 months ago
0
added fix for frames_per_slice edge case
#294
pauladkisson
closed
8 months ago
2
[Bug]: Incorrect`_frames_per_slice` attribute in `ScanImageTiffSinglePlaneImagingExtractor` results in incorrect video indexing
#293
weiglszonja
closed
8 months ago
2
Feature request: Adding support for saving CNMFE results in Caiman
#292
EricThomson
opened
9 months ago
0
Add _roi_response_denoised to store denoised traces
#291
alessandratrapani
closed
7 months ago
5
Version workflow
#290
pauladkisson
closed
9 months ago
1
[Github.CI] Update dev version from 0.5.6 to 0.5.7
#289
github-actions[bot]
closed
9 months ago
0
[Github.CI] Update dev version from to
#288
github-actions[bot]
closed
9 months ago
0
Alternate name than 'neuropil' when saving Caiman denoised calcium traces?
#287
EricThomson
closed
7 months ago
8
Update Version
#286
pauladkisson
closed
9 months ago
2
[Feature]: Check for Changelog for each PR
#285
pauladkisson
closed
7 months ago
1
[pre-commit.ci] pre-commit autoupdate
#284
pre-commit-ci[bot]
closed
9 months ago
0
Update Docs
#283
pauladkisson
closed
9 months ago
0
Update Docs
#282
pauladkisson
closed
9 months ago
14
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