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catalystneuro
/
roiextractors
Python-based module for extracting from, converting between, and handling optical imaging data from several file formats. Inspired by SpikeInterface.
https://roiextractors.readthedocs.io/en/latest/index.html
BSD 3-Clause "New" or "Revised" License
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7
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Fix Update Dev Version on Release Workflow
#304
pauladkisson
closed
4 months ago
0
Bump tj-actions/changed-files from 29.0.4 to 41.0.0 in /.github/workflows
#303
dependabot[bot]
closed
5 months ago
0
Update Changelog for v0.5.7 Release and add Changelog check for future work
#302
pauladkisson
closed
5 months ago
1
[Feature]: Depth Slice for VolumetricImagingExtractor
#301
pauladkisson
opened
5 months ago
0
[pre-commit.ci] pre-commit autoupdate
#300
pre-commit-ci[bot]
closed
5 months ago
0
[Feature]: Support for mid-cycle splits of ScanImageTiff files
#299
pauladkisson
opened
5 months ago
0
[Bug]: ScanImageTiffSinglePlaneImagingExtractor cannot read files with only 1 frame each
#298
pauladkisson
opened
5 months ago
0
Multifile scanimage
#297
pauladkisson
closed
5 months ago
9
[Feature]: Dedicated MultiFile ScanImage ImagingExtractors
#296
pauladkisson
closed
5 months ago
0
[pre-commit.ci] pre-commit autoupdate
#295
pre-commit-ci[bot]
closed
5 months ago
0
added fix for frames_per_slice edge case
#294
pauladkisson
closed
5 months ago
2
[Bug]: Incorrect`_frames_per_slice` attribute in `ScanImageTiffSinglePlaneImagingExtractor` results in incorrect video indexing
#293
weiglszonja
closed
5 months ago
2
Feature request: Adding support for saving CNMFE results in Caiman
#292
EricThomson
opened
6 months ago
0
Add _roi_response_denoised to store denoised traces
#291
alessandratrapani
closed
5 months ago
5
Version workflow
#290
pauladkisson
closed
6 months ago
1
[Github.CI] Update dev version from 0.5.6 to 0.5.7
#289
github-actions[bot]
closed
6 months ago
0
[Github.CI] Update dev version from to
#288
github-actions[bot]
closed
6 months ago
0
Alternate name than 'neuropil' when saving Caiman denoised calcium traces?
#287
EricThomson
closed
5 months ago
8
Update Version
#286
pauladkisson
closed
6 months ago
2
[Feature]: Check for Changelog for each PR
#285
pauladkisson
closed
4 months ago
1
[pre-commit.ci] pre-commit autoupdate
#284
pre-commit-ci[bot]
closed
6 months ago
0
Update Docs
#283
pauladkisson
closed
7 months ago
0
Update Docs
#282
pauladkisson
closed
7 months ago
14
[Documentation]: Brand Logo for Readme
#281
pauladkisson
opened
7 months ago
0
Update Readme
#280
pauladkisson
closed
7 months ago
5
[pre-commit.ci] pre-commit autoupdate
#279
pre-commit-ci[bot]
closed
7 months ago
0
Fix bug report versions
#278
pauladkisson
closed
6 months ago
2
Update bug_report.yml
#277
bendichter
closed
7 months ago
0
add inscopix imaging extractor
#276
bendichter
closed
3 months ago
10
add inscopix extractor for cell_set
#275
bendichter
opened
7 months ago
1
[Feature]: Add support for Inscopix
#274
bendichter
opened
7 months ago
0
clean:
#273
bendichter
closed
6 months ago
1
Add function to extract ROIs metadata from ScanImage tiff
#272
alessandratrapani
closed
7 months ago
1
[pre-commit.ci] pre-commit autoupdate
#271
pre-commit-ci[bot]
closed
8 months ago
0
Extract roi indices from redcell.npy in Suite2pExtractor
#270
alessandratrapani
closed
8 months ago
3
[pre-commit.ci] pre-commit autoupdate
#269
pre-commit-ci[bot]
closed
8 months ago
0
Two small improvements to `BrukerTiffMultiPlaneImagingExtractor`
#268
h-mayorquin
closed
8 months ago
2
Improve Bruker xml parsing by using iterparse instead of parsing the complete xml file
#267
h-mayorquin
closed
8 months ago
7
[Feature]: Notify admins on daily test failure
#266
CodyCBakerPhD
opened
9 months ago
0
Fix tests on main
#265
CodyCBakerPhD
closed
9 months ago
0
Update dashboard action
#264
CodyCBakerPhD
closed
9 months ago
0
Fix override of `channel_name` in `Suite2pSegmentationExtractor`
#263
weiglszonja
closed
9 months ago
2
Inconsistency in `ScanImageTiffSinglePlaneImagingExtractor` sampling frequency data for multi-channels and multi-planes imaging data
#262
alessandratrapani
opened
9 months ago
0
[pre-commit.ci] pre-commit autoupdate
#261
pre-commit-ci[bot]
closed
9 months ago
0
[Documentation]: README demos deprecated NwbSegmentationExtractor.write_segmentation
#260
rly
opened
10 months ago
0
Fix docstring in CaimanSegmentationExtractor
#259
rly
closed
10 months ago
0
[Feature]: Support for ScanImage recording over multiple .tif files
#258
alessandratrapani
closed
9 months ago
1
Fix `MicroManagerTiffImagingExtractor` private extractor's `dtype`
#257
weiglszonja
closed
10 months ago
1
Docstring tests
#256
pauladkisson
closed
10 months ago
0
[pre-commit.ci] pre-commit autoupdate
#255
pre-commit-ci[bot]
closed
10 months ago
0
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