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catalystneuro
/
roiextractors
Python-based module for extracting from, converting between, and handling optical imaging data from several file formats. Inspired by SpikeInterface.
https://roiextractors.readthedocs.io/en/latest/index.html
BSD 3-Clause "New" or "Revised" License
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[Documentation]: Brand Logo for Readme
#281
pauladkisson
opened
10 months ago
0
Update Readme
#280
pauladkisson
closed
9 months ago
5
[pre-commit.ci] pre-commit autoupdate
#279
pre-commit-ci[bot]
closed
10 months ago
0
Fix bug report versions
#278
pauladkisson
closed
9 months ago
2
Update bug_report.yml
#277
bendichter
closed
10 months ago
0
add inscopix imaging extractor
#276
bendichter
closed
6 months ago
10
add inscopix extractor for cell_set
#275
bendichter
opened
10 months ago
1
[Feature]: Add support for Inscopix
#274
bendichter
opened
10 months ago
0
clean:
#273
bendichter
closed
9 months ago
1
Add function to extract ROIs metadata from ScanImage tiff
#272
alessandratrapani
closed
10 months ago
1
[pre-commit.ci] pre-commit autoupdate
#271
pre-commit-ci[bot]
closed
11 months ago
0
Extract roi indices from redcell.npy in Suite2pExtractor
#270
alessandratrapani
closed
10 months ago
3
[pre-commit.ci] pre-commit autoupdate
#269
pre-commit-ci[bot]
closed
11 months ago
0
Two small improvements to `BrukerTiffMultiPlaneImagingExtractor`
#268
h-mayorquin
closed
11 months ago
2
Improve Bruker xml parsing by using iterparse instead of parsing the complete xml file
#267
h-mayorquin
closed
11 months ago
7
[Feature]: Notify admins on daily test failure
#266
CodyCBakerPhD
closed
2 months ago
1
Fix tests on main
#265
CodyCBakerPhD
closed
12 months ago
0
Update dashboard action
#264
CodyCBakerPhD
closed
1 year ago
0
Fix override of `channel_name` in `Suite2pSegmentationExtractor`
#263
weiglszonja
closed
1 year ago
2
Inconsistency in `ScanImageTiffSinglePlaneImagingExtractor` sampling frequency data for multi-channels and multi-planes imaging data
#262
alessandratrapani
opened
1 year ago
0
[pre-commit.ci] pre-commit autoupdate
#261
pre-commit-ci[bot]
closed
1 year ago
0
[Documentation]: README demos deprecated NwbSegmentationExtractor.write_segmentation
#260
rly
opened
1 year ago
0
Fix docstring in CaimanSegmentationExtractor
#259
rly
closed
1 year ago
0
[Feature]: Support for ScanImage recording over multiple .tif files
#258
alessandratrapani
closed
1 year ago
1
Fix `MicroManagerTiffImagingExtractor` private extractor's `dtype`
#257
weiglszonja
closed
1 year ago
1
Docstring tests
#256
pauladkisson
closed
1 year ago
0
[pre-commit.ci] pre-commit autoupdate
#255
pre-commit-ci[bot]
closed
1 year ago
0
[pre-commit.ci] pre-commit autoupdate
#254
pre-commit-ci[bot]
closed
1 year ago
0
Multi-Plane and Multi-Channel Support for ScanImage
#253
pauladkisson
closed
1 year ago
4
added success/failure logic to Full Tests workflow
#252
pauladkisson
closed
1 year ago
1
Fixed Github Workflows
#251
pauladkisson
closed
1 year ago
2
Fixed broken badge
#250
pauladkisson
closed
1 year ago
0
[Bug]: Background Components are mixed up in CaimanSegmentationExtractor
#249
pauladkisson
closed
8 months ago
3
VolumetricImagingExtractor
#248
pauladkisson
closed
1 year ago
2
[Feature]: Add optional lazy look-up of extractor properties
#247
pauladkisson
opened
1 year ago
10
Flatten different TiffImagingExtractors into separate folders
#246
pauladkisson
opened
1 year ago
0
Unify Volumetric/MultiPlane Imaging API
#245
pauladkisson
closed
1 year ago
6
Add note about `get_video` convention to `ImagingExtractor`
#244
h-mayorquin
closed
1 year ago
11
Add numpdoc validation to .pre-commit-config.yaml
#243
pauladkisson
closed
1 year ago
8
Update `Suite2pSegmentationExtractor` to support multi channel and multi plane outputs
#242
weiglszonja
closed
1 year ago
3
Multi-Plane and Multi-Channel Support for ScanImage
#241
pauladkisson
closed
1 year ago
13
[Feature]: Multi-channel and Multi-plane support for ScanImage
#240
pauladkisson
closed
1 year ago
0
[pre-commit.ci] pre-commit autoupdate
#239
pre-commit-ci[bot]
closed
1 year ago
0
[Feature]: Refactor Codebase to improve clarity/readability
#238
pauladkisson
opened
1 year ago
0
Docstring checker
#237
pauladkisson
closed
1 year ago
7
[Feature]: Codespell in pre-commit
#236
pauladkisson
opened
1 year ago
2
Streamline Docstrings
#235
pauladkisson
closed
1 year ago
3
[Feature]: Suite2p multiple optical channels
#234
tuanpham96
closed
1 year ago
1
[pre-commit.ci] pre-commit autoupdate
#233
pre-commit-ci[bot]
closed
1 year ago
2
Bump scipy from 1.5.2 to 1.10.0 in /docs
#232
dependabot[bot]
closed
1 year ago
1
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