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Hello, I am having trouble with using tanggle on my Splitstree output. I can sucessfully plot the woodmouse data. I tried comparing my data to the woodmouse example, and I cannot see where the differe…
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Is it possible to programmatically export order of taxa on the left and right of a tanglegram. I assumed that "Export -> Taxon Display Labels..." would do it, but the ~legalese~labels seem not to be …
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It is possible to export an image of , e.g., a network, to svg or png (pdf doesn't work for me, but that is another issue). It is also possible to export a workflow and run it on the command line. But…
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Hi all,
I'm using the new SplitsTree6 App to construct neighbor-net networks, which has been working well. However, I’m encountering an issue when trying to export the networks in Nexus format. The…
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I tried to run Mycorrhiza examples with Ubuntu 18.04.4 using the python script, but the following error occurs:
Outputting data in Nexus format.: 100%|████████| 90/90 [00:00
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Hello!
I am trying to use ggnetworx to visualize and mark up a SplitsTree generated network. I’ve exported a nexus file from SplitsTree (version 4.14.4), but I receive the following error and warnin…
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Hello!
I'm trying to plot a network imported from SplitsTree. When I simply plot the network, all tips appear to be labeled.
```
plot(test2, "2D", show.tip.label = T, edge.width = .5, cex = .5…
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the compare script is also excellent @LinguList and I do see that my judgments were too loose. I can put this file into Edictor and see side by side the cognancy judgments - I think this should really…
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Installing from source code requires BEASTLabs to be installed and declared as a dependency (for beast.inference). Perhaps add this to the readme?
I cannot compile Nexus2XML as that requires jloda an…
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I have a fasta file with 844 sequences of length 14844 bp. My attempts to plot a simple network have been unsuccessful due to the following error.
```
library(phangorn)
alignment