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User requested the installation of bamUtil [1] [2].
[1] https://github.com/statgen/bamUtil
[2] https://sdsc.zendesk.com/agent/tickets/38683
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I’m currently using the test VCF file you provided to create SAV files for chromosomes 18 and 20, and I encountered some issues when trying to concatenate the two SAV files.
**Attempt 1**:
I used …
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`(base) [root@c2004 DosageConvertor]# /usr/local/python-3.6-ana/bin/cget install -f ./requirements.txt
Downloading https://github…
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Hi Jonathon,
I think this condition will be always true when merging empirical dose files, because format_fields vector is filled out with "DS" and "LDS" a few lines above:
https://github.com/stat…
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Dear Peter:
Sorry to bug you on this. I am very puzzled that some of my GWAS do NOT have Manhattan plot displayed. Please see the screenshot below. Even after I clicked the "Manhatten" link, noth…
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After executing `cget install -f ./requirements.txt`, it prints a long list of items, followed by this error message:
```
Command failed: ['/usr/local/bin/cmake', '--build', '/Users/biona001/Benjami…
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I noticed that I have negative values for BEST.POSTERIOR from freemuxlet. This was reported before in https://github.com/statgen/popscle/issues/11 and fixed (in https://github.com/statgen/popscle/comm…
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1) download
`git clone "https://github.com/statgen/Rprs.git"`
2) Go to the library you'd like to install
` R CMD INSTALL ../Rprs -l ./
`
Warnings and errors:
```
Downloading https:/…
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Dear Apex author,
I have encountered a issue in using LMM for Apex Cis/Trans
For the cis analysis, with the following commands:
```
apex cis --vcf /mnt/mfs/statgen/neuro-apex/ROSMAP-vcf/ROSMAP…
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I think the "genetics research" page (which may be one of the first that people go to after the front page) suffers a little from having the links to popgen, statgen, etc buried in the text. Could we …