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Thanks for the good software.
I have completed the searching and profiling commands and got profiling results of multiple samples. How to merge these profiling results into one feature table for d…
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I did a profiling run with NetRAX, on a 1000 sites MSA (belonging to a simulated 8 taxon-tree), with 1 random and 1 parsimony starting tree. Turns out that trying arc insertion moves is pretty slow (s…
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@tcatapano do we have somewhere a description of [level-1](https://github.com/plazi/ggxml2taxpub-treatments/tree/main/level1) following issue #17 . let me know so I can document this since more people…
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Reading the rds files (?) is painfully slow and makes the tests take minutes to complete. Maybe we can speed things up.
I'll have to take a look at what's actually inside. Maybe we can go with, e.g…
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Hi,
I was wandering if it is possible to visualize the results of my generalized linear model analysis using the heat_tree function.
Specifically I have an otu table (species vs samples) and b…
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I have successfully compiled and run Ray, but have no clue how to run Ray Meta? What is the difference in the command line to run Ray Meta vs. Ray vanilla? I have a metagenomic sample with 3 closely r…
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From the mailing list:
>Hi all, I am trying to get a local instance of web protégé configured to deal with our ontologies.
>I am doing several tests with different ontologies and I am getting s…
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Hi,
We want to try this tool for DA based on _sequence_ abundance table, as it was generated with Sourmash gather (as opposed to taxonomic abundance like mOTUs or MetaPhlAn generate, referring to […
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_Happens in Chrome only?_ Visual "tearing" in the property inspector. This is cleaned up by any forced redraw of the page.
Possibly caused by simultaneously drawing while the inspector slides (animat…