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Ray -- Parallel genome assemblies for parallel DNA sequencing
http://denovoassembler.sf.net
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The program seems stuck
#248
lfaller
opened
6 years ago
2
Ray Meta: What is the difference between scaffolds and contigs?
#247
lfaller
opened
7 years ago
0
best kmer selection
#246
fgvieira
opened
7 years ago
2
RAY_running_time and memory_usage
#245
Nastassiia
opened
7 years ago
0
Detailed step documentation
#244
Wookie777
opened
7 years ago
0
Ray vs Ray Meta
#243
vnkoparde
opened
8 years ago
4
No output FASTA created
#242
ajmazurie
opened
8 years ago
0
Surveyor filtering
#241
zorino
opened
8 years ago
0
Error during compilation
#240
jvollme
opened
8 years ago
3
Crash while allocating memory
#239
menzzana
opened
8 years ago
0
What reads compose contigs/scaffolds
#238
necrolyte2
closed
9 years ago
5
Read.cpp:48: possible array index out of range
#237
dcb314
opened
9 years ago
2
Gene Ontology folder no results
#236
ashishdamania
opened
9 years ago
2
Floating Point Exception
#235
ashishdamania
opened
9 years ago
15
Exceeding maxkmerlength flag should be stronger
#234
plattsa
opened
9 years ago
1
avoid deadends
#233
sebhtml
closed
10 years ago
8
reduce required overlap for merger
#232
sebhtml
opened
10 years ago
0
Go through low coverage regions
#231
sebhtml
opened
10 years ago
1
Re-implement the code that read input files in parallel.
#230
sebhtml
opened
10 years ago
0
Error: can not add ...
#229
sebhtml
closed
10 years ago
6
HiSeq-2500-NA12878-demo-2x150 on colosse
#228
sebhtml
closed
10 years ago
2
release 2.3.0 for debian
#227
sebhtml
closed
10 years ago
4
Release 2.3.1
#226
sebhtml
closed
10 years ago
3
Fails to build with LLVM
#225
sebhtml
closed
10 years ago
17
Write output numbers before doing Get Neighbor
#224
fredericraymond
opened
10 years ago
0
Ray on x86 seg fault: Address not mapped (Vertex::addRead)
#223
sebhtml
opened
10 years ago
4
seed registration fails at -k 51 but not -k 49
#222
sebhtml
opened
10 years ago
7
Ray does not run if only 2 cores are assigned
#221
bastian-wur
closed
10 years ago
3
Segfault when using mini-ranks-per-rank
#220
bachev
closed
10 years ago
9
Getting 'Critical exception: The length of the requested memory exceeds the CHUNK_SIZE' while running Ray
#219
PolinaN
opened
10 years ago
8
Add a parameter -minimum-seed-length (default 100)
#218
sebhtml
closed
10 years ago
1
[RayPlatform/actors/Actor.o] Error 1
#217
guyleonard
closed
10 years ago
2
Matrix generation must be reproducible and deterministic
#216
sebhtml
closed
10 years ago
21
Test Ray Communities
#215
sebhtml
closed
10 years ago
3
-detect-sequence-files is wrongly pairing some unrelated files
#214
sebhtml
closed
10 years ago
1
Random errors on colosse on some Qin et al. samples
#213
sebhtml
closed
10 years ago
12
run unit tests
#212
sebhtml
closed
10 years ago
4
2.3.1
#211
sebhtml
closed
10 years ago
0
The MyHashTable class should not require the getKey method since the key is a template parameter
#210
sebhtml
closed
10 years ago
1
high VmData when starting processes on colosse
#209
sebhtml
closed
10 years ago
9
Ray stops during neighborhoods finding
#208
fredericraymond
closed
10 years ago
4
Ray not writing Neighborhood relations
#207
fredericraymond
closed
10 years ago
6
MPI I/O is buggy sometimes (maybe it is the Ray code ?)
#206
sebhtml
closed
10 years ago
4
debug code activated by -merge-seeds
#205
sebhtml
closed
10 years ago
2
test seed merging code on NormalStool
#204
sebhtml
opened
10 years ago
13
free memory in destructor of SeedWorker
#203
sebhtml
opened
10 years ago
0
Migrate the Ray code to a actor model
#202
sebhtml
closed
9 years ago
1
remove calls to allocateMasterModeHandle
#201
sebhtml
closed
9 years ago
2
remove calls to allocateSlaveModeHandle
#200
sebhtml
closed
9 years ago
3
System tests for v2.3.0 (on colosse)
#199
sebhtml
closed
10 years ago
3
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