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Ray -- Parallel genome assemblies for parallel DNA sequencing
http://denovoassembler.sf.net
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Ray on HiSeq-2500-NA12878-demo-2x150 using mp2
#198
sebhtml
closed
10 years ago
3
Ray on HiSeq-2500-NA12878-demo-2x150 using titan.ccs.ornl.gov
#197
sebhtml
closed
9 years ago
36
LargeCount VerticesExtractor::getDefaultNumberOfBitsForBloomFilter() should not overflow
#196
sebhtml
closed
10 years ago
1
Do a test run for HiSeq-2500-NA12878-demo-2x150 on colosse
#195
sebhtml
closed
10 years ago
24
Release Ray 2.3.0 !
#194
sebhtml
closed
10 years ago
5
This is outdated in LibraryStatistics.txt Distribution: Ray-Mate-Pairs-Sample_B38-5/Library0.txt
#193
sebhtml
closed
10 years ago
2
gossip seed merging is buggy
#192
sebhtml
closed
10 years ago
18
seg fault during scaffolding in 2.2.0
#191
sebhtml
closed
10 years ago
4
don't generate Scheduling information without -write-scheduling-data
#190
sebhtml
closed
10 years ago
1
There are contigs that are disconnected from the graph -- these are errors
#189
sebhtml
opened
11 years ago
0
implement a seed merger strategy.
#188
sebhtml
closed
10 years ago
20
add a second Bloom filter to remove sequencing errors with frequency = 2.
#187
sebhtml
opened
11 years ago
0
add Ray in Fedora
#186
sebhtml
closed
10 years ago
1
add Illumina in BaseSpace
#185
sebhtml
closed
10 years ago
2
add Ray in the Galaxy tool shed.
#184
sebhtml
closed
10 years ago
5
_DeNovoAssembly/Contigs.tsv
#183
plpla
closed
11 years ago
1
No seeds in circular genomes
#182
plpla
opened
11 years ago
0
put coverage value on top of vertices.
#181
sebhtml
closed
11 years ago
1
Circular sim link in RayPlatform
#180
nickholway
closed
11 years ago
5
Check list for v2.2.0
#179
sebhtml
closed
11 years ago
0
MPI_IO=y with large datasets sometimes fail
#178
sebhtml
closed
11 years ago
2
Makefile linker flag ordering issue GCC 4.6.3
#177
ctSkennerton
closed
11 years ago
2
add some file extensions
#176
sebhtml
closed
11 years ago
1
Ray with MPI_IO=y produces a file with bytes valued to 0 on a Blue Gene/Q
#175
sebhtml
closed
11 years ago
11
test on assemblathon 2 bird with -k 61
#174
sebhtml
closed
11 years ago
10
system tests
#173
sebhtml
closed
11 years ago
5
unit tests
#172
sebhtml
closed
11 years ago
1
check bubbles for /netmount/ip03_home/boisver1/issue-153/Sample_CQDM2-3
#171
sebhtml
closed
11 years ago
9
-route-messages fail sometimes if inside a .conf file
#170
sebhtml
closed
11 years ago
12
Add a modular build with shared objects for plugins
#169
sebhtml
closed
10 years ago
2
remove plugin_ from plugin directory, update tests too for that
#168
sebhtml
closed
11 years ago
1
test with the Intel compiler
#167
sebhtml
closed
11 years ago
1
port plugins to the simplified RayPlatform API
#166
sebhtml
closed
11 years ago
1
Ray hangs while coloring graph
#165
zorino
closed
11 years ago
11
add buffering for I/O operations for kmers.txt
#164
sebhtml
closed
11 years ago
3
Cannot use contigs from another assembler
#163
yaximik
opened
11 years ago
10
segmentation fault when reads are longer the the maximum
#162
sebhtml
closed
10 years ago
3
review the code for -disable-recycling
#161
sebhtml
closed
11 years ago
2
Elapsed time in table format
#160
jjv5
closed
11 years ago
3
Biom support please
#159
jjv5
opened
11 years ago
3
Greater than 1 and negative proportions in gene ontology
#158
fredericraymond
opened
11 years ago
4
new unit test for paired libraries
#157
sebhtml
closed
11 years ago
3
select the child if it's alone and it was not seen before, even in cases were reads are depleted
#156
sebhtml
opened
11 years ago
1
linking error on Blue Gene/Q
#155
sebhtml
closed
11 years ago
7
writting scaffolds is slow as hell
#154
sebhtml
closed
11 years ago
3
Duplicated contigs
#153
fredericraymond
closed
11 years ago
23
run system tests for v2.2.0
#152
sebhtml
closed
11 years ago
1
run unit tests for v2.2.0
#151
sebhtml
closed
11 years ago
1
tips can not be seeds
#150
sebhtml
closed
11 years ago
3
rewrite the checkpointing code to dump 1 file per process instead of many files, use large offsets
#149
sebhtml
opened
11 years ago
2
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