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Paper: https://www.nature.com/articles/s41586-022-05688-9
Abstract:
Cell identity is governed by the complex regulation of gene expression, represented as gene-regulatory networks[1]. Here we use ge…
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### Overview
We need to compile a list of preferred transcription software services and compare their costs, allowed transcript quantity, transcription quality, etc.
### Action Items
- [x] Use `T…
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e.g. consider su(h). su(h) is, what, the transcription factor that binds DNA... delta is the ligand, notch is the receptor.
outline a few sets of verbiages to run by some biologists ;)
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Hi,
I want to generate a transcription factor scatter plot. I noticed that in the tutorial, the TFs are labeled with their "short" name.
 gene symbols in the recommended list to be used with pySCENIC (https://resources.aertslab.org/cistarget/tf_lists/allTFs_hg38.txt) include some genes that are assessed to …
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I'm trying to replicate the ICASSP 2022 paper result (A Lightweight Instrument-Agnostic Model for Polyphonic Note Transcription and Multipitch Estimation).
Having some trouble getting the model to…
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UniProtKB:Q9US54 | taf11 | enables | GO:0003713 transcription coactivator activity | ECO:0007826 IEA | GO_REF:0000118 | PANTHER:PTHR13218:SF8 | 284812 Schizosaccharomyces pombe (strain 972 / ATCC…
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### Description of feature
Hi, this is a really useful tool. A simple but useful addition would be to annotate whether a gene/transcript is a Transcription Factor or not.
At the moment I do this u…
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I have a large list of >277 genes that I still need to check for paralogs
This is quite time confusing but I have a heuristic!
Could you extract the PANTHER families for these?
If a panther fa…