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genomic-features
Genomic Features in Python from BioConductor's AnnotationHub
https://genomic-features.readthedocs.io
BSD 3-Clause "New" or "Revised" License
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Breaking changes to ibis
#77
emdann
opened
1 month ago
0
Update template to v0.4.0
#76
scverse-bot
opened
1 month ago
0
[pre-commit.ci] pre-commit autoupdate
#75
pre-commit-ci[bot]
opened
2 months ago
0
[pre-commit.ci] pre-commit autoupdate
#74
pre-commit-ci[bot]
closed
2 months ago
0
Add codespell pre-commit
#73
ivirshup
closed
2 months ago
0
[pre-commit.ci] pre-commit autoupdate
#72
pre-commit-ci[bot]
closed
2 months ago
0
Example where we directly connect to the ensembl servers
#71
ivirshup
opened
2 months ago
1
No more non-unique column names, or non-queryable columns in list_columns
#70
ivirshup
closed
2 months ago
1
add something for pre-commit to fix
#69
ivirshup
closed
2 months ago
0
add pre-commit CI
#68
ivirshup
closed
2 months ago
0
Some cleanup on the ensembldb code
#67
gamazeps
closed
2 months ago
1
Add UCSC TxDb
#66
gamazeps
opened
3 months ago
3
Add Chip_seq_genomic_ranges_tutorial
#65
vmuckerson
closed
2 months ago
7
Sort output
#64
thomas-reimonn
opened
3 months ago
4
`return_type`
#63
ivirshup
opened
3 months ago
0
What order should results be in?
#62
ivirshup
opened
3 months ago
7
Better downloads
#61
ivirshup
opened
3 months ago
1
Fix import
#60
ivirshup
closed
3 months ago
1
Feat: Use duckdb as backend instead of sqlite
#59
thomas-reimonn
closed
3 months ago
3
Test against duckdb
#58
ivirshup
closed
2 months ago
8
Fix: Add tqdm dependency and remove prettier from pre-commit
#57
thomas-reimonn
closed
3 months ago
2
Update template to v0.3.1
#56
scverse-bot
closed
3 months ago
2
Update template to v0.3.0
#55
scverse-bot
closed
4 months ago
0
Renaming
#54
ivirshup
opened
9 months ago
1
Update template to v0.2.22
#53
scverse-bot
closed
7 months ago
0
Update template to v0.2.21
#52
scverse-bot
closed
10 months ago
0
Fix rendering of method parameters
#51
ivirshup
closed
9 months ago
1
Remove Filter.required_tables method
#50
ivirshup
closed
1 year ago
0
Reduce EnsemblDB public interface
#49
ivirshup
closed
1 year ago
0
Make internal EnsemblDB methods private
#48
ivirshup
closed
1 year ago
1
Finalizing names
#47
ivirshup
opened
1 year ago
0
Return better dtypes
#46
ivirshup
opened
1 year ago
0
Transcription Factor column
#45
james-cranley
opened
1 year ago
1
`transcripts`, `exons` functions + some filters
#44
ivirshup
closed
1 year ago
3
Providing access to protein annotations and general note
#43
jorainer
opened
1 year ago
2
`list_columns` includes columns from `"metadata"` and `"chromosome"` table
#42
ivirshup
closed
2 months ago
1
codecov badge
#41
ivirshup
closed
1 year ago
1
Use more features in basic tutorial
#40
ivirshup
closed
1 year ago
2
Add opengraph support to docs
#39
ivirshup
closed
1 year ago
0
Add simple repr for EnsemblDB
#38
ivirshup
closed
1 year ago
0
Add pypi badge
#37
ivirshup
closed
1 year ago
1
Update authors
#36
ivirshup
closed
1 year ago
2
Add functionality to join three tables that are partially related
#35
lauradmartens
closed
1 year ago
1
Get table of promoter region
#34
emdann
opened
1 year ago
1
Defining the main genomic coordinates for each table
#33
emdann
opened
1 year ago
2
Filter by genomic range
#32
emdann
closed
1 year ago
5
Add more filters
#31
ivirshup
closed
1 year ago
2
User guide section: filters
#30
ivirshup
opened
1 year ago
1
Filter negation
#29
ivirshup
closed
1 year ago
0
Pandas intersphinx fix
#28
ivirshup
closed
1 year ago
1
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