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https://doi.org/10.1101/099879
> Massively parallel reporter assays (MPRAs) are a method to probe the effects of short sequences on transcriptional regulation activity. In a MPRA, short sequences a…
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Dear Feng,
I was pointed to this repository when looking at your publication "Integrated BATF transcriptional network regulates
suppressive intratumoral regulatory T cells". Apologies if I'm look…
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https://doi.org/10.1038/ncb2709
# Authors
Moignard, V., Macaulay, I.C., Swiers, G., Buettner, F., Schütte, J., Calero-Nieto, F.J., Kinston, S., Joshi, A., Hannah, R., Theis, F.J., Jacobsen, S.E.…
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I came across this paper in a Web of Science alert that may be helpful in writing our grant:
Shojaie, A., & Sedaghat, N. (2017). How Different Are Estimated Genetic Networks of Cancer Subtypes?. In…
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Here I will be posting discussion posts that promote computational methods for traversing, reconstructing, and identifying signaling pathways and interaction networks within a biological setting. This…
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1. [Integrating ChIP-seq with other functional genomics data](https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5888983/pdf/ely002.pdf)
2. [2014-nature review-Identifying and mitigating bias in next-gener…
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Hi Dr. Shao,
I'm generating the TT-seq analysis to see the influence of acute degradation of a TF on the transcription of mRNAs and eRNAs. I find your transcription unit annotation script - TU_filt…
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The team should check out this article, especially @NAnguiano and @anuvarsh.
[Kumar, S., & Dudley, J. (2007). Bioinformatics software for biologists in the genomics era. Bioinformatics, 23(14), 171…
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We need to pull a series of data to inform which genes to look for variants in.
There is a[ google doc here](https://docs.google.com/spreadsheets/d/1yX-5sfrC3vrahf4_k7-5rl4Oqzm853ollIMmUo1PTc0/edit…
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Hi,
sorry that i still have several questions to bother you.=.=
1.in the part of regulators network,labels of some genes are printed as picture below shows while other equal-sized ,equal-colored …