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This is because the human gene has a preferred label of `tp53`, while the mouse gene has a preferred label of `trp53`. It is therefore being sorted below all the other genes that have a preferred labe…
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`chr12 121442785 Minda_32 N ]chr15:40450790]N . PASS SVLEN=-1;SVTYPE=BND;SUPP_VEC=PB_severus_BND2201_1,ONT_severus_BND2461_1,PB_Sniffles2.BND.2F3MB,ONT_Sniffles2.BND.308MB,PB_r_79_1,ONT_r_70_1,ILL_Man…
jzook updated
1 month ago
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`chr12 121442780 Minda_31 N N[chr15:40450789[ . PASS SVLEN=-1;SVTYPE=BND;SUPP_VEC=PB_severus_BND2200_1,ONT_severus_BND2460_1,ILL_2509375136:2,ILL_gridss206bf_3880h,ILL_MantaBND:198369:0:1:1:0:0:1,PB_I…
jzook updated
1 month ago
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Wizard (or cards) appears after the user clicks the Get Started button:
- [ ] Add three, stubbed out, simple, initial cards -- one for genes, one for enrichment, one for network
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Request to have the same feature as in MIP/SCOUT where all possibly compound variants are uploaded when looking at one variant. Including VAF-data....
![image](https://user-images.githubusercontent…
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I am wondering if there is any documentation of how to use regexner and TokensRegex annotators in Python wrapper of corenlp. And also, how can I use my own customised regular expression?
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Issue #3 was getting cluttered so I started a new one for a new use case at @gwaygenomics recommendation. I'm following the format from the first couple of posts there.
Our lab is extremely interest…
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## Need
### TMB calculation today in BALSAMIC
The current definition is based on:
1. TMB was defined as the number of somatic, coding, base substitution, and indel mutations per megabase of genome …
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It would also be nice to have a column which indicates whether the sgSTOP recapitulates a frequent mutation in cancer or a place to search for cancer genes only.
ghost updated
7 years ago
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We'll need to have this in place to more easily showcase the FacileData API.
Some choices could include:
* The [ROSMAP](https://www.synapse.org/#!Synapse:syn3219045) project. This may be ideal s…