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In a git repo I do not own, ``datalad subdatasets`` fails with
```
adina@juseless in /data/project/ukb_vbm/ukb_cat/code
❱ datalad subdatasets
CommandError: 'git -c diff.ignoreSubmodules=none -c co…
adswa updated
2 weeks ago
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We would like to have panUKBB LD matrixes to improve our finemapping process.
3 ancestries: EUR, AFR, CSA
s3://pan-ukb-us-east-1/ld_release/UKBB.EUR.ldadj.bm
s3://pan-ukb-us-east-1/ld_release/U…
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Data associated with this project https://www.medrxiv.org/content/10.1101/2023.12.06.23299426v1 has been shared with Open Targets and needs ingesting into the GWAS Catalog. The data is presented in se…
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I am currently working on a trans-ancestry (EUR+EAS) meta-analysis and would like to use PolyFun for fine-mapping. Our reviewers have suggested we simulate a sample-size-weighted LD matrix (EUR vs. EA…
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Hi @fmazzarotto. Any chance you've generated a similar mapping for the recent UKB 500K WGS release?
Thanks,
David
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The code needs to take data inputs in the form of UK Biobank data, rather than the current CSV input. This should be discussed before implementation.
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A user wrote in asking about the allele numbers (AN) for this [variant](https://gnomad.broadinstitute.org/variant/3-10052405-G-A?dataset=gnomad_r4). I realized from their question that the non-UKB A…
ch-kr updated
1 month ago
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##### Description
Version 7.7.0:
**Generating java.net.URLEncoder.encode(String, String) instead of the preferable one java.net.URLEncoder.encode(String, Charset)**
Problem is when I am using o…
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We can show performance improvements in https://github.com/asoroa/ukb/tree/master/wsdeval with our version of the data?
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Hi,
In the recent release of 500,000 genomes, the UKB has provided SV calls, but only in bgzipped sample-level vcf files.
I've tried merging these files in groups to create a pVCF- after unzippi…