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Hi, nice work! I am applying for the UKBB dataset now. I have applied the account. Could you share the category ID or other dataset information for me? Because I don't know which dataset I need to app…
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We would like to have panUKBB LD matrixes to improve our finemapping process.
3 ancestries: EUR, AFR, CSA
s3://pan-ukb-us-east-1/ld_release/UKBB.EUR.ldadj.bm
s3://pan-ukb-us-east-1/ld_release/U…
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Hi,
Running the demo pipeline, all of the results CSV files are generated except for the wall thickness.
The error I get is:
`
1
Traceback (most recent call last):
File "short_axis/eval_wa…
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Hi, when using regionplot, the desired plot appears in second place after an empty plot. In Rmd,e.g.
![image](https://github.com/user-attachments/assets/b77dcfa4-aa00-461a-8600-1caab0247ac7)
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Include the UK BioBank GWAS hits across all traits as another catalog, in addition to EBI.
This overlaps with a current task to include these hits in the LocusZoom API, so this is a timely additio…
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## Summary
For example, input HCP1200 and got error for missing `dataset_description.json`. Also, should we rename the `bids_dir` argument to something more broad, like `recon_input`?
## Additional …
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Hi team,
I am trying to build a pipeline for fine-mapping with Susie. My results are sometimes off. I'll describe about my input data and what are the issues I am facing, please help me resolving t…
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Hi, I am trying to run GEM analysis, but it keeps showing an error about phenotype file. I have attached my code here. Do you know what is my problem here?
singularity exec \
> -B /humgen/ManningL…
lc491 updated
5 months ago
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data is in here. gs://mvp-transfer/meta/all/summary_stats_filtered/
see how beta,pval and AF would fit for each.
Juha M can give the case/control numbers for the main pheno pages.
┆Issue is sync…
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Check phenotype data we extracted from the UKBB, was it self-reported and ICD coding? Consider a sensitivity analysis with only ICD coding phenotypes. We could do three analyses: 1. Self-reported and …