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## Overview
We are parsing out 100% of "other entities/titles" as `oboInOwl:hasExactSynonym`, but it is not always the case, or perhaps is never the case, that they are exact.
Example:
[USHER SYN…
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Hi,
I am trying to convert a West Nile virus auspice tree to a MAT. The `matUtils extract` keeps including "NC_045512" in the output file, but it's not in my input auspice file.
`matUtils extrac…
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KP.2+A2512G,G14773A(Orf1b:D436N)+C23277T(S:T572I)+A25359G(S:K1266R)
This is misplaced by usher in a flip-flop branch @AngieHinrichs
GISAID query: A2512G,G14773A,C23277T,A25359G
No. of seqs: 14(…
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Hi, I wrote an open-sourced usher analyse tool that can automatically highlight important lineages in usher-processed jsons. Hope it can help everyone find and analyse new lineages more quickly, espec…
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In order to simplify `Room`s, I'd like us to get rid of the `locked` / `internal` etc. distinctions and instead leverage a piece of Furniture.
## Fauxsonas
- Guest - Unauthenticated `Person`
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Most KP.2.3 has S:31del, however the 31del is after the KP.2.3 defining mutations of S:H146Q, Orf3a:K67N
I find a KP.2.3 sub-branch with S:T572I that emerges from a KP.2.3 branch before the S:31del. …
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KP.2+C15579T+C21998T(S:H146Y)
GISAID reads this mutation as T21994C+del21998_22000, resulting in S:H146del instead of the S:Y144del for normal JN.1*s.
However, starting from S:Y144del, usher's S:…
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Loading a large tree (SC2 Usher) takes quite a while (~1min) even on fairly performant hardware (M1 Pro 32GB).
I can imagine that gzip decompression might be a bottleneck - zstd decompresses much f…
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I just tried to follow the installation instructions at https://usher-wiki.readthedocs.io/en/latest/QuickStart.html I tried three things, none of which worked.
1. Following the Quick install comma…
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After getting customer’s data, will appear popup window with request from the usher to submit his details and confirm the customer’s figure.