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AGAT has been working great for me so far, so thanks. I'm trying to determine if the ORFs of my GTF are properly defined. Trying to work out if the start/stop codons are missing from the CDS.
I've …
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Hello,
I have a D.melanogaster gff3 from Ensembl and I've extracted the transcript ids of the canonical transcripts for each protein coding gene. I would like to filter (keep) all entries in the gf…
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Dear developers.
```
Traceback (most recent call last):
File "/mnt/shared/scratch/awebb/apps/conda/envs/ENSEMBL_submission_env/bin/EMBLmyGFF3", line 10, in
sys.exit(main())
File "/mnt/…
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Build keretrendszer: Maven
CI: GitHub Actions
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From https://github.com/metanorma/mn-native-pdf/actions/runs/7941367939/job/21683643021:
> ```
> Run make all published
> ...
> ### skipping documents/iec-rice-fr.presentation.html
> cp mn-sample…
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I'm seeing a much larger increase in rendering time from adding a blur filter to an image on v0.33.0 and later than earlier versions
Rendering this svg:
```svg
```
Testing with: `./r…
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Good morning 😊
I am opening this issue on the recommendation of @rob-p and our discussion over on BioStar (https://www.biostars.org/p/486346/#486637).
I was using STAR to index and align my raw r…
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Some warnings like this one are thrown:
```
WARNING level1: This feature level1 is not a duplicate but has an ID already used.
/!\ AGAT might mix up the child features and create chimeric records.
…
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**Is your feature request related to a problem? Please describe.**
I have a set of genes and I want to filter the gff accordingly. agat_sp_filter_feature_by_attribute_value.pl only handles single com…
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**Is your feature request related to a problem? Please describe.**
I am using a recent version of AGAT that I would like to cite; but I noticed that the most recent version on the Zenodo is only 1.2.…