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Good afternoon!
These two tools seem similar in some ways, and I would appreciate your feedback how how they differ in approach and intended usage.
>a rare read is erroneous if it has a neighbor…
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Hi, thanks for your contribution to the variation detection. I am using **VarDictJava**, and encountering some problems, hoping to get your help. The variant we want is not in the tbl file VarDictJava…
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### Description of the bug
Hi!
I'm running the pipeline with the following pipeline:
```
nextflow run nf-core/circdna \
-r 1.0.4 \
-profile docker \
-resume \
--max_cpus 9 \
--max_memory …
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core genes: 2017
single copy core genes: 1836
Number of conserved sequences: 1812
species specific conserved sequences: 536
potential primer pair(s): 4578
primer pairs with good target binding: 4…
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Hello!
Might have an idea for your tool:
### Prerequisites
- [x] make sure you're are using the latest version by `seqkit version`
- [x] read the [usage](http://bioinf.shenwei.me/seqkit/usag…
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I have a few WGS samples (matched T/N) at 80X with relatively high purity and have matched FISH showing ecDNA with the target gene. I ran amplicon architect suite with suggested inputs and the output …
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The accession BK010471 is for a crAssphage that is ubiquitous in human gut metagenomes ([link](https://www.nature.com/articles/ncomms5498)), and in particular is found in the 454 data set SRR073439.
…
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We are planning to benchmark a set of metabarcoding tools and I thought to use OPAL. When investigating the tool, I thought one could use it for metabarcoding assessment just as well as long as one ca…
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I'm having some issues with the calculateChromosomeRelativeCoverage function running with the tumor_cov object being addressed at a nonexistent index. What do you believe could cause this?
```
…
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I initially discovered this while building the 2024.5 docs, but also replicated locally. Within a 2024.5 amplicon environment (on mac OS) the command in PD mice that utilizes ancombc with `donor * gen…