Illumina strelka issues

Illumina / strelka

Strelka2 germline and somatic small variant caller

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How is strand bias calculated and what does it mean in this context?

#243 CraigJAnderson opened 2 weeks ago
0
Will a insertion/deletion at the end of a callRegion be called?

#242 ray1919 opened 1 month ago
0
Error calling bam files derived from standard ONT

#241 nparmalee opened 4 months ago
0
Python3

#240 lculibrk opened 5 months ago
1
call mtDNA variants from scRNA or WGS

#239 isadeghi87 opened 5 months ago
0
how to install strelka on linux?

#238 gabrielet closed 5 months ago
3
DEVELOPER_MODE is true in src release tarballs

#237 aowenson-imm opened 6 months ago
0
GQ and PL fields

#236 mashid opened 7 months ago
0
Strelka filtering out important variant

#235 yusufzhc opened 8 months ago
0
Scripts to extract variant allele frequency (VAF)

#234 maximus3219 opened 10 months ago
1
Include AD (allelic depths) in format from somatic variants

#233 juliawiggeshoff closed 8 months ago
1
Meaning of taskExitCode -9

#232 Jessime opened 1 year ago
1
All variants being labeled as "LowEVS"

#231 ElizabethBorden opened 1 year ago
1
Incorrect handling of non-N nucleotides with quality zero after Q-score binning

#230 ivan-mh opened 1 year ago
0
Failing to index VCF file

#229 acboulet opened 1 year ago
0
Number of AD, ADF and ADR should be "R"

#228 christopher-schroeder opened 1 year ago
0
inconsistent reproducibility of variants

#227 anoronh4 opened 1 year ago
0
Only the first Genome Segment called when putting entire chromosome in .bed file

#226 sergeyvilov opened 1 year ago
0
How to detect somatic mutations with allele frequencies nearly 0.01?

#225 wuyuling327 opened 1 year ago
1
Long error using the code below

#224 HyojeenLee opened 1 year ago
0
Which command to use for somatic calling and RNA sequencing?

#223 HyojeenLee opened 1 year ago
0
CONFIGURATION ERROR: Reference genome mismatch:

#222 HyojeenLee opened 1 year ago
0
Does input fastq need process of splicing in advance?

#221 HyojeenLee opened 1 year ago
0
make process bug

#220 hzongyao opened 1 year ago
0
INFO/DP field not reported

#219 SusiJo opened 1 year ago
0
Got WARNING and ERROR info when using StrelkaSomaticWorkflow

#218 Dragonlongzhilin opened 1 year ago
2
Guidelines/tips for filtering VCFs after running strelka2 germline?

#217 seetarajpara closed 1 year ago
0
increase sensitivity

#216 lmanchon opened 2 years ago
0
Can't find reference fasta file

#215 morrirestistance opened 2 years ago
0
unusual allele calls following indel

#214 mcfiston opened 2 years ago
1
Using Strelka2 for Allele-Specific Expression (ASE) - RNAseq

#213 gpalou4 opened 2 years ago
0
Scoring model features

#212 LeiHaoa opened 2 years ago
0
strelka2 Assertion `! indelRates.isInit' failed

#211 sagitaninta closed 2 years ago
1
Error in running strelka 2.9.10

#210 TZhang11 opened 2 years ago
1
Call variants using strelka

#209 Hrishi4545 opened 2 years ago
0
Should i deduplicate bam file using picard before call somatic

#208 changyunjian opened 2 years ago
1
Which fields/TAGS does strelka use?

#207 ksahlin opened 2 years ago
0
--callRegions for WGS - run in parallel for i.e. each Chromosome

#206 FriederikeHanssen closed 2 years ago
2
Parsing read depth and allele frequency from Strelka VCF

#205 Wangxin555 opened 2 years ago
0
Add <limits> headers for gcc-12

#204 trofi opened 2 years ago
1
Installing Strelka2 on macOS

#203 kris-nader closed 2 years ago
0
rna flag in variants calling

#202 maringa780 opened 2 years ago
0
Question: Quality score de novo (DQ)

#201 Talo07 opened 2 years ago
0
Can't find any expected BAM/CRAM index files

#200 MaitreyaSil opened 2 years ago
1
Error in running strelka

#199 WengangXbio opened 3 years ago
1
Variant Allele Frequency with Strelka v2.9.10

#198 YanaVassileva opened 3 years ago
0
Somatic variant calling in RNA?

#197 alexandruioanvoda opened 3 years ago
0
Variant in RNA

#196 alfonso-lam opened 3 years ago
0
Installation errors - binaries/release code

#195 desmodus1984 opened 3 years ago
0
Problem with Strelka2's default parameter "maxIndelSize = 49"

#194 Tinnaa opened 3 years ago
1