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Illumina
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strelka
Strelka2 germline and somatic small variant caller
GNU General Public License v3.0
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How is strand bias calculated and what does it mean in this context?
#243
CraigJAnderson
opened
2 weeks ago
0
Will a insertion/deletion at the end of a callRegion be called?
#242
ray1919
opened
1 month ago
0
Error calling bam files derived from standard ONT
#241
nparmalee
opened
4 months ago
0
Python3
#240
lculibrk
opened
5 months ago
1
call mtDNA variants from scRNA or WGS
#239
isadeghi87
opened
5 months ago
0
how to install strelka on linux?
#238
gabrielet
closed
5 months ago
3
DEVELOPER_MODE is true in src release tarballs
#237
aowenson-imm
opened
6 months ago
0
GQ and PL fields
#236
mashid
opened
7 months ago
0
Strelka filtering out important variant
#235
yusufzhc
opened
8 months ago
0
Scripts to extract variant allele frequency (VAF)
#234
maximus3219
opened
10 months ago
1
Include AD (allelic depths) in format from somatic variants
#233
juliawiggeshoff
closed
8 months ago
1
Meaning of taskExitCode -9
#232
Jessime
opened
1 year ago
1
All variants being labeled as "LowEVS"
#231
ElizabethBorden
opened
1 year ago
1
Incorrect handling of non-N nucleotides with quality zero after Q-score binning
#230
ivan-mh
opened
1 year ago
0
Failing to index VCF file
#229
acboulet
opened
1 year ago
0
Number of AD, ADF and ADR should be "R"
#228
christopher-schroeder
opened
1 year ago
0
inconsistent reproducibility of variants
#227
anoronh4
opened
1 year ago
0
Only the first Genome Segment called when putting entire chromosome in .bed file
#226
sergeyvilov
opened
1 year ago
0
How to detect somatic mutations with allele frequencies nearly 0.01?
#225
wuyuling327
opened
1 year ago
1
Long error using the code below
#224
HyojeenLee
opened
1 year ago
0
Which command to use for somatic calling and RNA sequencing?
#223
HyojeenLee
opened
1 year ago
0
CONFIGURATION ERROR: Reference genome mismatch:
#222
HyojeenLee
opened
1 year ago
0
Does input fastq need process of splicing in advance?
#221
HyojeenLee
opened
1 year ago
0
make process bug
#220
hzongyao
opened
1 year ago
0
INFO/DP field not reported
#219
SusiJo
opened
1 year ago
0
Got WARNING and ERROR info when using StrelkaSomaticWorkflow
#218
Dragonlongzhilin
opened
1 year ago
2
Guidelines/tips for filtering VCFs after running strelka2 germline?
#217
seetarajpara
closed
1 year ago
0
increase sensitivity
#216
lmanchon
opened
2 years ago
0
Can't find reference fasta file
#215
morrirestistance
opened
2 years ago
0
unusual allele calls following indel
#214
mcfiston
opened
2 years ago
1
Using Strelka2 for Allele-Specific Expression (ASE) - RNAseq
#213
gpalou4
opened
2 years ago
0
Scoring model features
#212
LeiHaoa
opened
2 years ago
0
strelka2 Assertion `! indelRates.isInit' failed
#211
sagitaninta
closed
2 years ago
1
Error in running strelka 2.9.10
#210
TZhang11
opened
2 years ago
1
Call variants using strelka
#209
Hrishi4545
opened
2 years ago
0
Should i deduplicate bam file using picard before call somatic
#208
changyunjian
opened
2 years ago
1
Which fields/TAGS does strelka use?
#207
ksahlin
opened
2 years ago
0
--callRegions for WGS - run in parallel for i.e. each Chromosome
#206
FriederikeHanssen
closed
2 years ago
2
Parsing read depth and allele frequency from Strelka VCF
#205
Wangxin555
opened
2 years ago
0
Add <limits> headers for gcc-12
#204
trofi
opened
2 years ago
1
Installing Strelka2 on macOS
#203
kris-nader
closed
2 years ago
0
rna flag in variants calling
#202
maringa780
opened
2 years ago
0
Question: Quality score de novo (DQ)
#201
Talo07
opened
2 years ago
0
Can't find any expected BAM/CRAM index files
#200
MaitreyaSil
opened
2 years ago
1
Error in running strelka
#199
WengangXbio
opened
3 years ago
1
Variant Allele Frequency with Strelka v2.9.10
#198
YanaVassileva
opened
3 years ago
0
Somatic variant calling in RNA?
#197
alexandruioanvoda
opened
3 years ago
0
Variant in RNA
#196
alfonso-lam
opened
3 years ago
0
Installation errors - binaries/release code
#195
desmodus1984
opened
3 years ago
0
Problem with Strelka2's default parameter "maxIndelSize = 49"
#194
Tinnaa
opened
3 years ago
1
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